bardetlab / methylasso

A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets
MIT License
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Typo in the example #1

Closed Miguel-M-O closed 1 year ago

Miguel-M-O commented 1 year ago

Hi!,

I tested the code in my computer with the example files and there is a typo that gives back an error. The separation between the replicates in each condition should be without spaces after the comma.

Rscript MethyLasso.R --n1 normal --c1 WGBS_normal_1_chr1_meth.bed.gz,WGBS_normal_2_chr1_meth.bed.gz,WGBS_normal_3_chr1_meth.bed.gz --n2 cancer --c2 WGBS_cancer_1_chr1_meth.bed.gz,WGBS_cancer_2_chr1_meth.bed.gz,WGBS_cancer_3_chr1_meth.bed.gz --cov 4 --meth 5 -q 0.05

delbala commented 1 year ago

Hi,

Thank you for pointing out the typo!

Delphine