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barricklab / breseq

breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
http://barricklab.org/breseq
GNU General Public License v2.0
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Conda downloads older version #326

Closed antanij closed 1 year ago

antanij commented 1 year ago

I am experiencing a Fatal error "Covariate 'quality' exceeded enforced maximum". I see that it has been fixed in the latest version v0.37.1, released 8 days ago.

I created a new environment and performed conda install breseq. However, it seems that an older version has been downloaded as I get the same Fatal error.

Is there a specific way to download the latest version or do we just have to wait until it is integrated in bioconda? How long does it typically take?

jeffreybarrick commented 1 year ago

I'm not sure what the frequency is for the automatic updates, but I manually posted a pull request to do this...

You can monitor it here: https://github.com/bioconda/bioconda-recipes/pull/37219

jeffreybarrick commented 1 year ago

It's available now

antanij commented 1 year ago

Thank you!