breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
Hi, I would like to consult a way to shorten assembly time when using additional plasmids reference. Thanks.
I noticed that when using additional references, such as plasmid, for assembly, the run time is significantly longer. Considering I could allocate more CPUs and/or RAM using computing cluster, is it possible to set it up (and how) so that the run time become short? Thank you.
Hi, I would like to consult a way to shorten assembly time when using additional plasmids reference. Thanks.
I noticed that when using additional references, such as plasmid, for assembly, the run time is significantly longer. Considering I could allocate more CPUs and/or RAM using computing cluster, is it possible to set it up (and how) so that the run time become short? Thank you.