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barthelemymp / TULIP-TCR

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missing TCR chains #13

Open sunway1999 opened 6 months ago

sunway1999 commented 6 months ago

When making prediction using predict.py, here is the example input

,CDR3b,CDR3a,peptide,MHC,binder 0,CASSIRASYEQYF,CAGASGNTGKLIF,GILGFVFTL,HLA-A02:01,1 1,CASSIRSTDTQYF,CAGSGGGSQGNLIF,GILGFVFTL,HLA-A02:01,1 2,CASSIRAADTQYF,CALDMGGGSQGNLIF,GILGFVFTL,HLA-A*02:01,1

what if I only have TCR alpha or beta chain. should I leave the missing field empty?

thanks,

Wei

barthelemymp commented 6 months ago

Hi Wei,

the missing elements should be replaced by the missing token: <MIS>