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bartongroup / Proteus

R package for analysing proteomics data
MIT License
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Normalize the data of SILAC #41

Closed yueli8 closed 4 years ago

yueli8 commented 4 years ago

Hello bartongroup,

Thank you for developing so nice software.

I have SILAC protein data from three patients. How can I normalize the A10: Light/Heavy value over these patients?

I studied the evidence.txt.gz in the package proteusLablFree. Which column is the ratio of Light/Heavy?

Thank you in advance for great help!

Best,

Yue

MarekGierlinski commented 4 years ago

SILAC data are processed differently. See the SILAC vignette:

http://www.compbio.dundee.ac.uk/user/mgierlinski/proteus/SILAC.html

Marek

On Sun, 8 Nov 2020 at 09:48, yueli8 notifications@github.com wrote:

Hello,

I have SILAC protein data from three patients. How can I normalize the A10: Light/Heavy value over these patients?

I studied the evidence.txt.gz in the package proteusLablFree. Which column is the ratio of Light/Heavy?

Thank you in advance for great help!

Best,

Yue

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yueli8 commented 4 years ago

Hello MareGierlinski,

Thank you so much for your great help!

Best,

Yue