RATs should not longer crash if none of the genes/transcripts meet the eligibility criteria for testing. #35
The number of genes in the annotation is now recorded correctly in $Parameters. #38
New features
RATs now supports reproducible "random" subsampling, by supplying a seed as argument to call_DTU() #41
RATs now supports scaling of abundances independently for each sample. #39
New plot type: pairwise Pearson's correlation heatmap among samples.
Enhancements
The logical columns in the results tables are no longer allowed to be NA as a result of ineligibility to test. Instead, all NA will be reclassified as FALSE. This makes subsetting of the tables behave in a much more intuitive way. #36
Additional internal tests, code cleanup and decoupling of current functionality from deprecated functionality. None of these should affect the end-user.
Bug fixes
$Parameters
. #38New features
call_DTU()
#41Enhancements
NA
as a result of ineligibility to test. Instead, allNA
will be reclassified asFALSE
. This makes subsetting of the tables behave in a much more intuitive way. #36