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bartongroup / RATS

Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
MIT License
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Tidy up code #60

Closed fruce-ki closed 5 years ago

fruce-ki commented 5 years ago

The call to the bootstraps consists of large code duplication. It should be boxed up in an appropriate function to aid maintenance.

fruce-ki commented 5 years ago

Encapsulating the bootstrapping process so only one copy of the code is needed.

Also: The new lean mode (only available in devel branch) is uniformly overwriting DTU results with rejections. Could not pin-point where or why. Maybe after the relevant code is restructured it will be easier to track down and fix.