kiramt
commented
5 years ago Looks like the dependencies list for the conda installer has a load of things which aren't needed - probably a clean out will resolve this.
Open kiramt opened 5 years ago
kiramt
commented
5 years ago Looks like the dependencies list for the conda installer has a load of things which aren't needed - probably a clean out will resolve this.
AmaliT
commented
4 years ago Hi
Has there been any headway regarding this? I am trying to install this using conda install and running into the same issues. Any help/suggestions would be much appreciated.
Cheers Amali
I could not install the conda environment from the provided environment file. Running the suggested commands gave the following error:
Solving environment: failed ResolvePackageNotFound:
To try and fix this problems I removed the pinning on the exact build, leaving only the pinning on version number. This returned the following error: Solving environment: failed
UnsatisfiableError: The following specifications were found to be in conflict:
I was able to install by manually creating an environment using the dependencies listed in the readme, although using the pip install for rosa downgraded the pandas install from 0.24 to 0.19.
The ability to install all dependencies as a conda environment is very useful to the average user, and the authors should consider either fixing the supplied env file, or (ideally) creating a proper rosa conda package, so that rosa and all its dependencies (both R and python) can be installed with conda install rosa.
Sudbery I. Referee Report For: Detection and mitigation of spurious antisense expression with RoSA [version 1; peer review: 1 approved with reservations]. F1000Research 2019, 8:819 (https://doi.org/10.5256/f1000research.20776.r49670)