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bartongroup / Simpson_Barton_Nanopore_1

jupyter notebooks for Parker et al. eLife 2019
MIT License
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Could you provide a channel to access " chimerID"? #1

Closed weir12 closed 4 years ago

weir12 commented 4 years ago

Hi: I am honored to read your article and pipeline.Good job! But I have a little confuse about "chimerID" which is used in your pipeline

https://github.com/bartongroup/Simpson_Barton_Nanopore_1/blob/476f4b1c56ca731fa93152039715a1928822dfe6/pipeline/chimera_pipeline/Snakefile#L79 https://github.com/bartongroup/Simpson_Barton_Nanopore_1/blob/5081c895aa0682d17c1331a00c2ec9e5805e2a0e/pipeline/polya_pipeline/scripts/pAks/pAks/diff_pA.py#L10

This appears to be a python packages that is also an executable in unix. Most importantly,I didn't find any information of chimerID on Google github pypi conda or biostar... I sincerely hope that you can provide the download channel of chimerID Thanks!

mparker2 commented 4 years ago

Hi @weir12, Sorry, the script should have been in Simpson_Barton_Nanopore_1/pipeline/chimera_pipeline/scripts/chimerID but was listed as a submodule so wasn't accessible. You should be able to see the files now.

BW Matt