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baryshnikova-lab
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safepy
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
GNU General Public License v3.0
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sf.define_domains() - ValueError: The number of observations cannot be determined on an empty distance matrix.
#17
m-petersen
opened
5 months ago
6
installing in a python 3.10 environment creates a numpy package version clash
#16
samwindels
opened
5 months ago
0
using pickle instead of nx to load network.
#15
nodice73
closed
8 months ago
0
Enable composite network analysis in edgeless networks
#14
abarysh
closed
9 months ago
0
Merge upstream changes
#13
abarysh
closed
9 months ago
0
Revert "Issue10"
#12
abarysh
closed
9 months ago
0
Issue10
#11
abarysh
closed
9 months ago
0
Combine the enrichment landscapes into a scatter plot
#10
cscheeder
closed
9 months ago
0
Packaged for ease of installation, more flexible path assignments, refactorization etc, and tested ok
#9
rraadd88
closed
1 year ago
3
Bump ipython from 8.6.0 to 8.10.0 in /extras
#8
dependabot[bot]
opened
1 year ago
0
SAFE on map wo/ edges
#7
cscheeder
closed
11 months ago
2
Errors when running tests
#6
cscheeder
closed
1 year ago
2
Bump numpy from 1.14.1 to 1.22.0 in /extras
#5
dependabot[bot]
opened
2 years ago
0
Windows paths
#4
maxim1317
opened
4 years ago
4
plot_composite_network
#3
lacpromoter
opened
4 years ago
1
Command line support
#2
seoanezonjic
closed
4 years ago
0
Fix input deduplication e.g. two entries for one gene
#1
exue
closed
5 years ago
4