Closed kupiqu closed 5 years ago
bastibe
commented
5 years ago Thank you for your bug report. I suspect that this might be an incompatibility between Matlab's libc and the system's libc. (Why do they even ship their own libc???) Many people, myself included, like to disable Matlab's own libc because of issues like this. You can do this by (perhaps temporarily) renaming libstdc++ in /home/matlab/Matlab2019a/bin/glnxa64/ (probably).
Does that fix your issue?
kupiqu
commented
5 years ago Unfortunately not. I tried with Matlab's libraries as well as System's and Conda's. Neither worked.
kupiqu
commented
5 years ago Crash with system's libs:
< M A T L A B (R) >
Copyright 1984-2019 The MathWorks, Inc.
R2019a (9.6.0.1072779) 64-bit (glnxa64)
March 8, 2019
To get started, type doc.
For product information, visit www.mathworks.com.
--------------------------------------------------------------------------------
std::terminate() detected at dv. d’abr. 19 17:10:22 2019 -0400
--------------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled - No sandbox or build area path
Crash Mode : continue (default)
Default Encoding : UTF-8
Deployed : false
Desktop Environment : KDE
GNU C Library : 2.27 stable
Graphics Driver : Unknown hardware
Graphics card 1 : 0x8086 ( 0x8086 ) 0x5917 Version 0.0.0.0 (0-0-0)
Java Version : Java 1.8.0_181-b13 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
MATLAB Architecture : glnxa64
MATLAB Entitlement ID : 3633855
MATLAB Root : /home/matlab/Matlab2019a
MATLAB Version : 9.6.0.1072779 (R2019a)
OpenGL : hardware
Operating System : KDE neon User Edition 5.15
Process ID : 6094
Processor ID : x86 Family 6 Model 142 Stepping 10, GenuineIntel
Session Key : 90740a68-71e7-4a28-a516-8ae21cedd0e2
Static TLS mitigation : Enabled: Full
Window System : The X.Org Foundation (11906000), display :0
Fault Count: 1
Abnormal termination:
std::terminate()
Register State (captured):
RAX = 000000010000dc88 RBX = 00007fdb56be4d98
RCX = 000000000000000a RDX = 00007fdb56bc5e00
RSP = 00007fdb3a6c50f0 RBP = 00007fdb3a6c54b0
RSI = 0000000000000000 RDI = 00007fdb3a6c5100
R8 = 00007fdb56bd4d08 R9 = 00007fdb58f6f660
R10 = 00007fdb2d6c3000 R11 = 00000000d0079bf8
R12 = 00007fdb56bd4d08 R13 = 00007fdb3a6c5870
R14 = 00007fdb3a6c5d60 R15 = 00007fdb3a6c5d30
RIP = 00007fdb56add1ae EFL = 00ff00000000ff00
CS = 0000 FS = ff00 GS = 0000
Stack Trace (captured):
[ 0] 0x00007fdb56ad4713 /home/matlab/Matlab2019a/bin/glnxa64/libmwfl.so+00829203
[ 1] 0x00007fdb56ad490c /home/matlab/Matlab2019a/bin/glnxa64/libmwfl.so+00829708 _ZN10foundation4core4diag15stacktrace_base7captureEm+00000028
[ 2] 0x00007fdb56ad7052 /home/matlab/Matlab2019a/bin/glnxa64/libmwfl.so+00839762
[ 3] 0x00007fdb484f2553 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01213779
[ 4] 0x00007fdb484f5157 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01225047
[ 5] 0x00007fdb484f538a /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01225610
[ 6] 0x00007fdb484f5951 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01227089
[ 7] 0x00007fdb484f68d7 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01231063
[ 8] 0x00007fdb58c86a06 /usr/lib/x86_64-linux-gnu/libstdc++.so.6+00600582
[ 9] 0x00007fdb58c85a69 /usr/lib/x86_64-linux-gnu/libstdc++.so.6+00596585
[ 10] 0x00007fdb58c86418 /usr/lib/x86_64-linux-gnu/libstdc++.so.6+00599064 __gxx_personality_v0+00000744
[ 11] 0x00007fdb589ec553 /lib/x86_64-linux-gnu/libgcc_s.so.1+00066899
[ 12] 0x00007fdb589ecdd5 /lib/x86_64-linux-gnu/libgcc_s.so.1+00069077 _Unwind_Resume+00000293
[ 13] 0x00007fdb39c87405 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcos_impl.so+04649989
[ 14] 0x00007fdb56888caf /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00924847
[ 15] 0x00007fdb5688a468 /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00930920
[ 16] 0x00007fdb5688a512 /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00931090
[ 17] 0x00007fdb5688a0ff /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00930047
[ 18] 0x00007fdb40158323 /home/matlab/Matlab2019a/bin/glnxa64/libmwlxetypes.so+00238371
[ 19] 0x00007fdb41ade960 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+15214944
[ 20] 0x00007fdb40155c94 /home/matlab/Matlab2019a/bin/glnxa64/libmwlxetypes.so+00228500
[ 21] 0x00007fdb41304143 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06979907
[ 22] 0x00007fdb4130621a /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06988314
[ 23] 0x00007fdb411b873a /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05621562
[ 24] 0x00007fdb411ae8a2 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05580962
[ 25] 0x00007fdb411b8e76 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05623414
[ 26] 0x00007fdb411b8f76 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05623670
[ 27] 0x00007fdb412f0cd9 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06900953
[ 28] 0x00007fdb412f4413 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06915091
[ 29] 0x00007fdb41857d61 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12565857
[ 30] 0x00007fdb4180167c /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12211836
[ 31] 0x00007fdb41805baf /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12229551
[ 32] 0x00007fdb41808eb2 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12242610
[ 33] 0x00007fdb418a670f /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12887823
[ 34] 0x00007fdb418a6b22 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12888866
[ 35] 0x00007fdb43f2b751 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_interpreter.so+01288017 _Z51inEvalCmdWithLocalReturnInDesiredWSAndPublishEventsRKNSt7__cxx1112basic_stringIDsSt11char_traitsIDsESaIDsEEEPibbP15inWorkSpace_tag+00000065
[ 36] 0x00007fdb4860acaa /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00724138 _ZNK3iqm18InternalEvalPlugin24inEvalCmdWithLocalReturnERKNSt7__cxx1112basic_stringIDsSt11char_traitsIDsESaIDsEEEP15inWorkSpace_tag+00000074
[ 37] 0x00007fdb4860bf1e /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00728862 _ZN3iqm18InternalEvalPlugin7executeEP15inWorkSpace_tag+00000222
[ 38] 0x00007fdb484b0dd5 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00945621
[ 39] 0x00007fdb485fcf2d /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00667437
[ 40] 0x00007fdb485ddc02 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00539650
[ 41] 0x00007fdb485ddf98 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00540568
[ 42] 0x00007fdb5655b63c /home/matlab/Matlab2019a/bin/glnxa64/libmwmlutil.so+07378492 _ZNK14cmddistributor16IIPRunNowMessage7deliverERKN10foundation7msg_svc8exchange7RoutingE+00000044
[ 43] 0x00007fdb570afa0d /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02624013 _ZN10foundation7msg_svc8exchange12MessageQueue7deliverERKN7mwboost10shared_ptrIKNS1_8EnvelopeEEE+00000205
[ 44] 0x00007fdb570b0d83 /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02628995
[ 45] 0x00007fdb5709bd29 /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02542889
[ 46] 0x00007fdb5709d41f /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02548767
[ 47] 0x00007fdb57098b43 /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02530115
[ 48] 0x00007fdb564b62b1 /home/matlab/Matlab2019a/bin/glnxa64/libmwmlutil.so+06701745
[ 49] 0x00007fdb564b6552 /home/matlab/Matlab2019a/bin/glnxa64/libmwmlutil.so+06702418
[ 50] 0x00007fdb59cd2fc3 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03145667 _ZN7mwboost6detail8function26void_function_obj_invoker0INS_3_bi6bind_tINS3_11unspecifiedENS4_IS5_NS_8functionIFvvEEENS3_5list0EEENS3_5list1INS_17reference_wrapperINS_7promiseIvEEEEEEEEvE6invokeERNS1_15function_bufferE+00000035
[ 51] 0x00007fdb59cc5287 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03089031 _ZN7mwboost13unique_futureIvE3getEv+00001111
[ 52] 0x00007fdb4846edd5 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00675285
[ 53] 0x00007fdb59d5396b /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672427 _ZN14cmddistributor15PackagedTaskIIP10invokeFuncIN7mwboost8functionIFvvEEEEENS2_10shared_ptrINS2_13unique_futureIDTclfp_EEEEEERKT_+00000059
[ 54] 0x00007fdb59d53a58 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672664 _ZNSt17_Function_handlerIFN7mwboost3anyEvEZN14cmddistributor15PackagedTaskIIP10createFuncINS0_8functionIFvvEEEEESt8functionIS2_ET_EUlvE_E9_M_invokeERKSt9_Any_data+00000024
[ 55] 0x00007fdb48615dcc /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00769484 _ZN7mwboost6detail8function21function_obj_invoker0ISt8functionIFNS_3anyEvEES4_E6invokeERNS1_15function_bufferE+00000028
[ 56] 0x00007fdb48615a85 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00768645 _ZN3iqm18PackagedTaskPlugin7executeEP15inWorkSpace_tag+00000437
[ 57] 0x00007fdb484b0b35 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00944949
[ 58] 0x00007fdb485fcf2d /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00667437
[ 59] 0x00007fdb485e18e8 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00555240
[ 60] 0x00007fdb4a189eaa /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00241322
[ 61] 0x00007fdb4a18ac72 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00244850
[ 62] 0x00007fdb4a193c03 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00281603
[ 63] 0x00007fdb4a193d89 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00281993
[ 64] 0x00007fdb4a194288 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00283272 _Z8mnParserv+00000344
[ 65] 0x00007fdb484c14f2 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01012978
[ 66] 0x00007fdb59d5396b /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672427 _ZN14cmddistributor15PackagedTaskIIP10invokeFuncIN7mwboost8functionIFvvEEEEENS2_10shared_ptrINS2_13unique_futureIDTclfp_EEEEEERKT_+00000059
[ 67] 0x00007fdb59d53a58 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672664 _ZNSt17_Function_handlerIFN7mwboost3anyEvEZN14cmddistributor15PackagedTaskIIP10createFuncINS0_8functionIFvvEEEEESt8functionIS2_ET_EUlvE_E9_M_invokeERKSt9_Any_data+00000024
[ 68] 0x00007fdb48615dcc /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00769484 _ZN7mwboost6detail8function21function_obj_invoker0ISt8functionIFNS_3anyEvEES4_E6invokeERNS1_15function_bufferE+00000028
[ 69] 0x00007fdb48615a85 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00768645 _ZN3iqm18PackagedTaskPlugin7executeEP15inWorkSpace_tag+00000437
[ 70] 0x00007fdb484b0b35 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00944949
[ 71] 0x00007fdb485fcf2d /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00667437
[ 72] 0x00007fdb485dfeba /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00548538
[ 73] 0x00007fdb485e0b2f /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00551727
[ 74] 0x00007fdb48497e95 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00843413
[ 75] 0x00007fdb484984b3 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00844979
[ 76] 0x00007fdb48498d24 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00847140
[ 77] 0x00007fdb57fb6bdd /home/matlab/Matlab2019a/bin/glnxa64/libmwboost_thread.so.1.65.1+00080861
[ 78] 0x00007fdb58f846db /lib/x86_64-linux-gnu/libpthread.so.0+00030427
[ 79] 0x00007fdb5870c88f /lib/x86_64-linux-gnu/libc.so.6+01185935 clone+00000063
[ 80] 0x0000000000000000 <unknown-module>+00000000Interesting. This is a hard crash, which can only result from the loadlibrary call, because that's the only non-Matlab code in Transplant.
So this must be some kind of incompatibility between your operating system's version of libzmq and Matlab. What version of Matlab and Python are you running?
kupiqu
commented
5 years ago I use Matlab 2019a, zeromq 4.3.1 (conda) / libzmq5 4.2.5 (system), and Python 3.7.1 (conda environment) / Python 3.6.7 (system)
There is no difference betwen trying inside or outside conda's environment.
I guess not, but do you think the following could be of any help?
https://andyljones.tumblr.com/post/135109368968/using-matlab-with-zeromq https://github.com/zeromq/jeromq
kupiqu
commented
5 years ago I manually did the following in matlab and worked:
loadlibrary('libzmq.so.5', 'transplantzmq.h', 'alias', 'libzmq');
bastibe
commented
5 years ago Interesting! Could you check to see whether there is any difference between the system Python with the system's libzmq, vs the conda versions of both?
kupiqu
commented
5 years ago I loaded conda's version of libzmq with no error either. May the crash happen elsewhere?
Could you be a bit more specific in what you'd like me to test to this regard Could you check to see whether there is any difference between the system Python with the system's libzmq, vs the conda versions of both?
kupiqu
commented
5 years ago I added some disp outputs to see what is going on before the crash, perhaps you see sth unexpected that helps to fix the issue:
ZMQ(libname, address) function call
errortext(obj, instruction) function call with instruction:
zmq_socket
errortext(obj, instruction) function call with instruction:
zmq_connect
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 146 172 95 95 102 117 110 99
Columns 27 through 37
116 105 111 110 95 95 164 101 118 97 108
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 203 0 0 0 0 0 0 0
Column 27
0
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 146 172 95 95 102 117 110 99
Columns 27 through 38
116 105 111 110 95 95 165 110 117 109 101 108
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 203 64 8 0 0 0 0 0
Column 27
0
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 146 172 95 95 102 117 110 99
Columns 27 through 38
116 105 111 110 95 95 165 109 97 103 105 99
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 148 170 95 95 109 97 116 114
Columns 27 through 39
105 120 95 95 167 102 108 111 97 116 54 52 146
Columns 40 through 52
203 64 0 0 0 0 0 0 0 203 64 0 0
Columns 53 through 65
0 0 0 0 0 196 32 0 0 0 0 0 0
Columns 66 through 78
240 63 0 0 0 0 0 0 8 64 0 0 0
Columns 79 through 91
0 0 0 16 64 0 0 0 0 0 0 0 64
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 146 172 95 95 102 117 110 99
Columns 27 through 36
116 105 111 110 95 95 163 102 102 116
errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
Columns 1 through 13
130 164 116 121 112 101 165 118 97 108 117 101 165
Columns 14 through 26
118 97 108 117 101 148 170 95 95 109 97 116 114
Columns 27 through 39
105 120 95 95 170 99 111 109 112 108 101 120 49
Columns 40 through 52
50 56 146 203 63 240 0 0 0 0 0 0 203
Columns 53 through 65
64 89 0 0 0 0 0 0 197 6 64 43 129
Columns 66 through 78
16 11 19 106 16 64 0 0 0 0 0 0 0
Columns 79 through 91
0 10 12 7 82 85 130 50 192 245 240 153 18
Columns 92 through 104
201 249 5 192 33 242 34 29 204 238 3 64 0
Columns 105 through 117
164 220 199 234 128 122 191 196 142 74 45 142 162
Columns 118 through 130
10 192 234 153 228 253 34 117 24 64 156 112 195
Columns 131 through 143
72 129 255 234 63 152 135 53 14 61 7 43 192
Columns 144 through 156
146 13 155 72 168 57 1 64 180 206 184 139 74
Columns 157 through 169
148 16 192 226 131 136 187 133 232 246 191 96 15
Columns 170 through 182
134 242 134 254 255 63 83 253 57 250 242 247 40
Columns 183 through 195
192 94 130 238 62 204 19 20 192 146 248 26 122
Columns 196 through 208
171 205 24 64 140 101 121 63 136 123 17 192 170
Columns 209 through 221
5 203 249 181 139 21 64 86 214 127 129 11 147
Columns 222 through 234
29 64 54 197 146 160 245 236 43 64 78 27 175
Columns 235 through 247
141 242 91 23 192 162 194 149 88 60 76 55 64
Columns 248 through 260
82 40 206 209 57 228 23 64 102 146 136 90 147
Columns 261 through 273
251 33 64 248 50 116 88 213 127 214 191 228 237
Columns 274 through 286
243 162 205 243 1 64 96 20 136 109 48 107 18
Columns 287 through 299
64 184 211 198 16 171 215 16 64 228 254 132 66
Columns 300 through 312
236 87 21 64 64 55 177 94 165 8 28 192 128
Columns 313 through 325
199 26 26 198 207 170 63 112 19 57 80 224 77
Columns 326 through 338
24 64 200 85 17 224 240 176 248 191 220 211 78
Columns 339 through 351
54 133 222 31 192 241 57 94 16 215 0 15 64
Columns 352 through 364
52 46 6 43 40 213 223 191 128 236 129 242 206
Columns 365 through 377
52 221 63 246 7 121 188 66 39 2 64 31 122
Columns 378 through 390
175 201 64 111 0 192 166 184 204 181 232 216 34
Columns 391 through 403
192 154 179 213 142 207 203 35 64 170 122 70 25
Columns 404 through 416
116 121 41 192 236 212 157 96 23 128 227 63 68
Columns 417 through 429
116 185 97 20 224 8 192 142 246 180 130 12 104
Columns 430 through 442
36 192 132 55 131 64 91 245 242 63 8 227 112
Columns 443 through 455
183 34 169 6 192 186 191 51 7 238 121 16 192
Columns 456 through 468
112 50 111 149 255 197 237 191 234 79 204 69 151
Columns 469 through 481
76 36 64 106 195 229 104 95 76 255 191 166 177
Columns 482 through 494
233 147 22 128 22 64 74 188 201 205 122 131 24
Columns 495 through 507
64 0 26 200 236 35 103 137 191 180 193 255 104
Columns 508 through 520
186 140 9 192 48 205 255 36 169 73 28 192 35
Columns 521 through 533
17 11 24 170 58 16 64 166 150 225 137 161 28
Columns 534 through 546
30 192 24 10 31 14 191 167 28 192 73 243 222
Columns 547 through 559
68 64 82 48 192 228 35 233 52 234 122 242 191
Columns 560 through 572
158 109 112 106 108 46 21 192 212 6 120 23 206
Columns 573 through 585
77 24 64 110 79 185 139 225 170 31 192 235 95
Columns 586 through 598
167 54 117 138 19 64 187 135 85 194 103 183 33
Columns 599 through 611
64 206 7 174 231 49 84 12 64 0 25 100 124
Columns 612 through 624
234 129 195 63 14 19 169 174 22 208 39 64 84
Columns 625 through 637
43 229 227 224 179 225 191 80 136 248 181 109 205
Columns 638 through 650
224 63 122 167 16 178 87 89 35 192 219 60 212
Columns 651 through 663
246 25 20 19 64 237 34 214 50 178 6 31 192
Columns 664 through 676
96 187 155 124 154 231 11 64 150 135 5 136 201
Columns 677 through 689
166 250 191 192 3 203 201 16 224 23 64 216 128
Columns 690 through 702
244 88 192 208 13 64 32 8 88 185 135 200 231
Columns 703 through 715
191 113 198 173 153 206 60 19 192 12 178 224 25
Columns 716 through 728
8 105 48 192 236 125 81 105 92 156 10 64 82
Columns 729 through 741
73 203 239 79 8 42 192 218 188 105 204 178 69
Columns 742 through 754
23 192 10 6 183 236 51 125 32 192 46 104 50
Columns 755 through 767
28 226 167 16 192 68 250 160 4 40 37 17 192
Columns 768 through 780
4 92 246 103 164 178 37 192 9 136 187 13 34
Columns 781 through 793
46 47 192 195 22 173 177 113 221 246 63 178 8
Columns 794 through 806
24 86 64 65 26 64 128 124 106 126 171 3 249
Columns 807 through 819
63 3 44 64 72 98 173 35 64 62 80 179 238
Columns 820 through 832
110 47 8 64 208 60 196 244 82 157 28 192 104
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errortext(obj, instruction) function call with instruction:
zmq_send
receive(obj) function call
errortext(obj, instruction) function call with instruction:
zmq_msg_recv
errortext(obj, instruction) function call with instruction:
zmq_msg_close
send(obj,data) function call, with data:
129 164 116 121 112 101 163 97 99 107
errortext(obj, instruction) function call with instruction:
zmq_send
--------------------------------------------------------------------------------
std::terminate() detected at dl. d’abr. 22 01:19:36 2019 -0400
--------------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled - No sandbox or build area path
Crash Mode : continue (default)
Default Encoding : UTF-8
Deployed : false
Desktop Environment : KDE
GNU C Library : 2.27 stable
Graphics Driver : Unknown hardware
Graphics card 1 : 0x8086 ( 0x8086 ) 0x5917 Version 0.0.0.0 (0-0-0)
Java Version : Java 1.8.0_181-b13 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
MATLAB Architecture : glnxa64
MATLAB Entitlement ID : 3633855
MATLAB Root : /home/matlab/Matlab2019a
MATLAB Version : 9.6.0.1072779 (R2019a)
OpenGL : hardware
Operating System : KDE neon User Edition 5.15
Process ID : 23139
Processor ID : x86 Family 6 Model 142 Stepping 10, GenuineIntel
Session Key : b66fa6e7-2515-4fb5-91d3-00baf068bef6
Static TLS mitigation : Enabled: Full
Window System : The X.Org Foundation (11906000), display :0
Fault Count: 1
Abnormal termination:
std::terminate()
Register State (captured):
RAX = 0000000100007348 RBX = 00007fd397caad98
RCX = 000000000000000a RDX = 00007fd397c8be00
RSP = 00007fd3777160f0 RBP = 00007fd3777164b0
RSI = 0000000000000000 RDI = 00007fd377716100
R8 = 00007fd397c9ad08 R9 = 00007fd39a035660
R10 = 00007fd33927ad08 R11 = 00000000f59f93b0
R12 = 00007fd397c9ad08 R13 = 00007fd377716870
R14 = 00007fd377716d60 R15 = 00007fd377716d30
RIP = 00007fd397ba31ae EFL = 00ff00000000ff00
CS = 0000 FS = ff00 GS = 0000
Stack Trace (captured):
[ 0] 0x00007fd397b9a713 /home/matlab/Matlab2019a/bin/glnxa64/libmwfl.so+00829203
[ 1] 0x00007fd397b9a90c /home/matlab/Matlab2019a/bin/glnxa64/libmwfl.so+00829708 _ZN10foundation4core4diag15stacktrace_base7captureEm+00000028
[ 2] 0x00007fd397b9d052 /home/matlab/Matlab2019a/bin/glnxa64/libmwfl.so+00839762
[ 3] 0x00007fd3895b8553 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01213779
[ 4] 0x00007fd3895bb157 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01225047
[ 5] 0x00007fd3895bb38a /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01225610
[ 6] 0x00007fd3895bb951 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01227089
[ 7] 0x00007fd3895bc8d7 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01231063
[ 8] 0x00007fd399d4ca06 /usr/lib/x86_64-linux-gnu/libstdc++.so.6+00600582
[ 9] 0x00007fd399d4ba69 /usr/lib/x86_64-linux-gnu/libstdc++.so.6+00596585
[ 10] 0x00007fd399d4c418 /usr/lib/x86_64-linux-gnu/libstdc++.so.6+00599064 __gxx_personality_v0+00000744
[ 11] 0x00007fd399ab2553 /lib/x86_64-linux-gnu/libgcc_s.so.1+00066899
[ 12] 0x00007fd399ab2dd5 /lib/x86_64-linux-gnu/libgcc_s.so.1+00069077 _Unwind_Resume+00000293
[ 13] 0x00007fd376cd8405 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcos_impl.so+04649989
[ 14] 0x00007fd39794ecaf /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00924847
[ 15] 0x00007fd397950468 /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00930920
[ 16] 0x00007fd397950512 /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00931090
[ 17] 0x00007fd3979500ff /home/matlab/Matlab2019a/bin/glnxa64/libmx.so+00930047
[ 18] 0x00007fd381211323 /home/matlab/Matlab2019a/bin/glnxa64/libmwlxetypes.so+00238371
[ 19] 0x00007fd382787960 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+15214944
[ 20] 0x00007fd38120ec94 /home/matlab/Matlab2019a/bin/glnxa64/libmwlxetypes.so+00228500
[ 21] 0x00007fd381fad143 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06979907
[ 22] 0x00007fd381faf21a /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06988314
[ 23] 0x00007fd381e6173a /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05621562
[ 24] 0x00007fd381e578a2 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05580962
[ 25] 0x00007fd381e61e76 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05623414
[ 26] 0x00007fd381e61f76 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+05623670
[ 27] 0x00007fd381f99cd9 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06900953
[ 28] 0x00007fd381f9d413 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+06915091
[ 29] 0x00007fd382500d61 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12565857
[ 30] 0x00007fd3824aa67c /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12211836
[ 31] 0x00007fd3824aebaf /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12229551
[ 32] 0x00007fd3824b1eb2 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12242610
[ 33] 0x00007fd38254f70f /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12887823
[ 34] 0x00007fd38254fb22 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_lxe.so+12888866
[ 35] 0x00007fd3891ac751 /home/matlab/Matlab2019a/bin/glnxa64/libmwm_interpreter.so+01288017 _Z51inEvalCmdWithLocalReturnInDesiredWSAndPublishEventsRKNSt7__cxx1112basic_stringIDsSt11char_traitsIDsESaIDsEEEPibbP15inWorkSpace_tag+00000065
[ 36] 0x00007fd3896d0caa /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00724138 _ZNK3iqm18InternalEvalPlugin24inEvalCmdWithLocalReturnERKNSt7__cxx1112basic_stringIDsSt11char_traitsIDsESaIDsEEEP15inWorkSpace_tag+00000074
[ 37] 0x00007fd3896d1f1e /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00728862 _ZN3iqm18InternalEvalPlugin7executeEP15inWorkSpace_tag+00000222
[ 38] 0x00007fd389576dd5 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00945621
[ 39] 0x00007fd3896c2f2d /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00667437
[ 40] 0x00007fd3896a3c02 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00539650
[ 41] 0x00007fd3896a3f98 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00540568
[ 42] 0x00007fd39762163c /home/matlab/Matlab2019a/bin/glnxa64/libmwmlutil.so+07378492 _ZNK14cmddistributor16IIPRunNowMessage7deliverERKN10foundation7msg_svc8exchange7RoutingE+00000044
[ 43] 0x00007fd398175a0d /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02624013 _ZN10foundation7msg_svc8exchange12MessageQueue7deliverERKN7mwboost10shared_ptrIKNS1_8EnvelopeEEE+00000205
[ 44] 0x00007fd398176d83 /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02628995
[ 45] 0x00007fd398161d29 /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02542889
[ 46] 0x00007fd39816341f /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02548767
[ 47] 0x00007fd39815eb43 /home/matlab/Matlab2019a/bin/glnxa64/libmwms.so+02530115
[ 48] 0x00007fd39757c2b1 /home/matlab/Matlab2019a/bin/glnxa64/libmwmlutil.so+06701745
[ 49] 0x00007fd39757c552 /home/matlab/Matlab2019a/bin/glnxa64/libmwmlutil.so+06702418
[ 50] 0x00007fd39ad98fc3 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03145667 _ZN7mwboost6detail8function26void_function_obj_invoker0INS_3_bi6bind_tINS3_11unspecifiedENS4_IS5_NS_8functionIFvvEEENS3_5list0EEENS3_5list1INS_17reference_wrapperINS_7promiseIvEEEEEEEEvE6invokeERNS1_15function_bufferE+00000035
[ 51] 0x00007fd39ad8b287 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03089031 _ZN7mwboost13unique_futureIvE3getEv+00001111
[ 52] 0x00007fd389534dd5 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00675285
[ 53] 0x00007fd39ae1996b /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672427 _ZN14cmddistributor15PackagedTaskIIP10invokeFuncIN7mwboost8functionIFvvEEEEENS2_10shared_ptrINS2_13unique_futureIDTclfp_EEEEEERKT_+00000059
[ 54] 0x00007fd39ae19a58 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672664 _ZNSt17_Function_handlerIFN7mwboost3anyEvEZN14cmddistributor15PackagedTaskIIP10createFuncINS0_8functionIFvvEEEEESt8functionIS2_ET_EUlvE_E9_M_invokeERKSt9_Any_data+00000024
[ 55] 0x00007fd3896dbdcc /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00769484 _ZN7mwboost6detail8function21function_obj_invoker0ISt8functionIFNS_3anyEvEES4_E6invokeERNS1_15function_bufferE+00000028
[ 56] 0x00007fd3896dba85 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00768645 _ZN3iqm18PackagedTaskPlugin7executeEP15inWorkSpace_tag+00000437
[ 57] 0x00007fd389576b35 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00944949
[ 58] 0x00007fd3896c2f2d /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00667437
[ 59] 0x00007fd3896a78e8 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00555240
[ 60] 0x00007fd38b24feaa /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00241322
[ 61] 0x00007fd38b250c72 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00244850
[ 62] 0x00007fd38b259c03 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00281603
[ 63] 0x00007fd38b259d89 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00281993
[ 64] 0x00007fd38b25a288 /home/matlab/Matlab2019a/bin/glnxa64/libmwbridge.so+00283272 _Z8mnParserv+00000344
[ 65] 0x00007fd3895874f2 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+01012978
[ 66] 0x00007fd39ae1996b /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672427 _ZN14cmddistributor15PackagedTaskIIP10invokeFuncIN7mwboost8functionIFvvEEEEENS2_10shared_ptrINS2_13unique_futureIDTclfp_EEEEEERKT_+00000059
[ 67] 0x00007fd39ae19a58 /home/matlab/Matlab2019a/bin/glnxa64/libmwmvm.so+03672664 _ZNSt17_Function_handlerIFN7mwboost3anyEvEZN14cmddistributor15PackagedTaskIIP10createFuncINS0_8functionIFvvEEEEESt8functionIS2_ET_EUlvE_E9_M_invokeERKSt9_Any_data+00000024
[ 68] 0x00007fd3896dbdcc /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00769484 _ZN7mwboost6detail8function21function_obj_invoker0ISt8functionIFNS_3anyEvEES4_E6invokeERNS1_15function_bufferE+00000028
[ 69] 0x00007fd3896dba85 /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00768645 _ZN3iqm18PackagedTaskPlugin7executeEP15inWorkSpace_tag+00000437
[ 70] 0x00007fd389576b35 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00944949
[ 71] 0x00007fd3896c2f2d /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00667437
[ 72] 0x00007fd3896a5eba /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00548538
[ 73] 0x00007fd3896a6b2f /home/matlab/Matlab2019a/bin/glnxa64/libmwiqm.so+00551727
[ 74] 0x00007fd38955de95 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00843413
[ 75] 0x00007fd38955e4b3 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00844979
[ 76] 0x00007fd38955ed24 /home/matlab/Matlab2019a/bin/glnxa64/libmwmcr.so+00847140
[ 77] 0x00007fd39907cbdd /home/matlab/Matlab2019a/bin/glnxa64/libmwboost_thread.so.1.65.1+00080861
[ 78] 0x00007fd39a04a6db /lib/x86_64-linux-gnu/libpthread.so.0+00030427
[ 79] 0x00007fd3997d288f /lib/x86_64-linux-gnu/libc.so.6+01185935 clone+00000063
[ 80] 0x0000000000000000 <unknown-module>+00000000Interesting! So it seems the program is working for a while, and only crashes after running for a bit. Could you try starting Matlab with msgformat="json", so the message contents become readable?
Thank you for following up on this.
kupiqu
commented
5 years ago Interesting! So it seems the program is working for a while, and only crashes after running for a bit. Could you try starting Matlab with msgformat="json", so the message contents become readable?
Definitely. This will help a lot!
kupiqu
commented
5 years ago Found the issue. The problem seems to be in the exit function of the Matlab class in transplant_master.py.
If I comment out super(self.__class__, self).exit() everything works:
def exit(self):
"""Close the connection, and kill the process."""
# super(self.__class__, self).exit()
self.socket.close()
self.context.term()I see. I wasn't aware that the crash happened only on shutdown.
I can reproduce your crash now, although I am unclear about it's cause. Your current workaround does not actually terminate Matlab, it is still running in the background. But I found a better solution:
In transplant_remote.m, change lines 36-39 from
if should_die
quit('force')
endto
if should_die
return
endThis solves the issue on my computer. I am now checking why I wrote quit('force') in the first place.
kupiqu
commented
5 years ago Your current workaround does not actually terminate Matlab, it is still running in the background.
Yes, my workaround was more about avoiding the crash and to give you a clue of what could be going wrong, but I assumed that this instruction had some function there :)
This solves the issue on my computer.
Excellent. It works fine for me too. Thanks.
I am now checking why I wrote quit('force') in the first place.
Sounds good. I'll let you close this issue then (once you figure this out).
bastibe
commented
5 years ago Fixed in 4d78a29ce8d6d5aa1f08fa3522a7d8a44aa31c28. Thank you for your help in diagnosing this issue.
It crashes with matlab's libraries, as well as with system's and conda's. I'm out of ideas...