[COPD-MICCAI 2018] Upload the COPD-Gene data-set from hard drives to pghbio server.

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[COPD-MICCAI 2018] Upload the COPD-Gene data-set from hard drives to pghbio server. #38

Closed sumedhasingla closed 6 years ago

sumedhasingla commented 6 years ago

[x] Get the new tables for the most current COPD Gene dataset
[x] Upload hard drive -1
[x] Upload hard drive -2

sumedhasingla commented 6 years ago

Uploading hard-drive 1 at location: /pghbio/dbmi/batmanlab/Data/COPDGene/COPDGene-Phase1-HardDrive

sumedhasingla commented 6 years ago

As of now 4301 subjects uploaded. Each subject have dicom files for 4 volumes

Inspiration standard
Inspiration sharp
Expiration standard
Expiration sharp

kayhan-batmanghelich commented 6 years ago

Overal there 10K subjects, some (around 5K) subjects have follow-ups; I think up to 3 time points. Can you find out about it. Thanks.

sumedhasingla commented 6 years ago

Subjects which have images but there is no record in datafile "/pghbio/dbmi/batmanlab/Data/COPDGene/ClinicalData/phase 1 Final 10K/phase 1 Pheno/Final10000_Phase1_Rev_28oct16.txt"

10863K,21634G,16851H,10542Q,20356Z,14517L,18470F,23887T,14923W,15041T,13353C,17336W,12624C,16980S,17781R,14764C,19258M,12093X,14607M,10318L,14090B,22839D,25113Y,18998V,12699H,12592P,25183T,13112G,17822F,11754K,24676L,11515S,11376E,14757F,23555U,21773U,14773D,12156V,25734E,20077V,22547Q

sumedhasingla commented 6 years ago

All 9651 subjects folder in Phase 1 are uploaded.

sumedhasingla commented 6 years ago

All 6059 subjects in Phase 2 are uploaded. Location: /pghbio/dbmi/batmanlab/Data/COPDGene/COPDGene-Phase2-HardDrive/IMAGES