bauerdavid
commented
1 year ago Try updating the numpy version, I think that might be the issue.
Closed dimakbalazs closed 1 year ago
bauerdavid
commented
1 year ago Try updating the numpy version, I think that might be the issue.
dimakbalazs
commented
1 year ago oh, thank you. It works! NumPy and SciPy upgrades solved this problem.
Dávid Bauer @.***> ezt írta (időpont: 2022. okt. 3., H, 9:40):
Try updating the numpy version, I think that might be the issue.
— Reply to this email directly, view it on GitHub https://github.com/bauerdavid/napari-nD-annotator/issues/37#issuecomment-1265054053, or unsubscribe https://github.com/notifications/unsubscribe-auth/AZUQBI6LTBKWVBV37JB64Z3WBKEWHANCNFSM6AAAAAAQ3KGA5M . You are receiving this because you authored the thread.Message ID: @.***>
Describe the bug If I want start Annotation Toolbox & Object List it drops error.
To Reproduce Steps to reproduce the behavior: start napari-nd-annotator/object list
Plugin error
ValueError Traceback (most recent call last) ~\AppData\Local\Programs\Python\Python39\lib\site-packages\npe2_command_registry.py in resolve(self=CommandHandler(id='napari-nD-annotator.object_li..., python_name='napari_nd_annotator:ListWidgetBB')) 29 try: ---> 30 self.function = import_python_name(self.python_name) self.function = None global import_python_name = self.python_name = 'napari_nd_annotator:ListWidgetBB' 31 except Exception as e:
~\AppData\Local\Programs\Python\Python39\lib\site-packages\npe2\manifest\utils.py in import_python_name(python_name='napari_nd_annotator:ListWidgetBB') 166 --> 167 mod = import_module(module_name) mod = undefined import_module = module_name = 'napari_nd_annotator' 168 return getattr(mod, funcname)
~\AppData\Local\Programs\Python\Python39\lib\importlib__init__.py in import_module(name='napari_nd_annotator', package=None) 126 level += 1 --> 127 return _bootstrap._gcd_import(name[level:], package, level) global _bootstrap._gcd_import = name = 'napari_nd_annotator' level = 0 package = None 128
~\AppData\Local\Programs\Python\Python39\lib\importlib_bootstrap.py in _gcd_import(name='napari_nd_annotator', package=None, level=0)
~\AppData\Local\Programs\Python\Python39\lib\importlib_bootstrap.py in _find_and_load(name='napari_ndannotator', import=)
~\AppData\Local\Programs\Python\Python39\lib\importlib_bootstrap.py in _find_and_load_unlocked(name='napari_ndannotator', import=)
~\AppData\Local\Programs\Python\Python39\lib\importlib_bootstrap.py in _load_unlocked(spec=ModuleSpec(name='napari_nd_annotator', loader=
~\AppData\Local\Programs\Python\Python39\lib\importlib_bootstrap_external.py in exec_module(self=, module=)
~\AppData\Local\Programs\Python\Python39\lib\importlib_bootstrap.py in _call_with_frames_removed(f=, *args=( at 0x000001534D85A0E0, fil...ackages\napari_nd_annotator__init.py", line 2>, {'builtins': {'ArithmeticError': , 'AssertionError': , 'AttributeError': , 'BaseException': , 'BlockingIOError': , 'BrokenPipeError': , 'BufferError': , 'BytesWarning': , 'ChildProcessError': , 'ConnectionAbortedError': , ...}, 'cached': r'C:\Users\Cochlear\AppData\Local\Programs\Python..._nd_annotator\pycache\init.cpython-39.pyc', 'doc': None, 'file': r'C:\Users\Cochlear\AppData\Local\Programs\Python...lib\site-packages\napari_nd_annotator\init.py', 'loader': , 'name': 'napari_nd_annotator', 'package': 'napari_nd_annotator', 'path': [r'C:\Users\Cochlear\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_nd_annotator'], 'spec__': ModuleSpec(name='napari_nd_annotator', loader=
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_nd_annotator__init__.py in 3 ----> 4 from ._widgets import AnnotatorWidget, InterpolationWidget, ListWidgetBB global _widgets = undefined global AnnotatorWidget = undefined global InterpolationWidget = undefined global ListWidgetBB = undefined
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_nd_annotator_widgets__init__.py in ----> 1 from .interpolation_widget import InterpolationWidget global interpolation_widget = undefined global InterpolationWidget = undefined 2 from .object_list import ListWidgetBB 3 from .projections import SliceDisplayWidget
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_nd_annotator_widgets\interpolation_widget.py in 13 from ._utils.progress_widget import ProgressWidget ---> 14 from ..mean_contour import settings global mean_contour = undefined global settings = undefined 15 from ..mean_contour.meanContour import MeanThread
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_nd_annotator\mean_contour\settings.py in 1 import json ----> 2 from .util import getReconMethod global util = undefined global getReconMethod = undefined 3
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_nd_annotator\mean_contour\util.py in 1 import numpy as np ----> 2 from ._essentials import ReconstructionMethods, Contour global _essentials = undefined global ReconstructionMethods = undefined global Contour = undefined 3 import matplotlib.pyplot as plt
src\napari_nd_annotator\mean_contour\cEssentialscy.pyx in init napari_nd_annotator.mean_contour._essentials()
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
During handling of the above exception, another exception occurred:
RuntimeError Traceback (most recent call last) ~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_qt\menus\plugins_menu.py in _add_toggle_widget(key=('napari-nD-annotator', 'Object List'), hook_type='dock') 95 96 if hook_type == 'dock': ---> 97 dock_widget, _w = self._win.add_plugin_dock_widget(key) dock_widget = undefined _w = undefined global self._win.add_plugin_dock_widget = undefined key = ('napari-nD-annotator', 'Object List') 98 else: 99 dock_widget = self._win._add_plugin_function_widget(key)
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari_qt\qt_main_window.py in add_plugin_dock_widget(self=, plugin_name='napari-nD-annotator', widget_name='Object List') 662 dock_kwargs = {} 663 --> 664 result = _npe2.get_widget_contribution(plugin_name, widget_name) result = undefined _npe2.get_widget_contribution = plugin_name = 'napari-nD-annotator' widget_name = 'Object List' 665 if result: 666 Widget, widget_name = result
~\AppData\Local\Programs\Python\Python39\lib\site-packages\napari\plugins_npe2.py in get_widget_contribution(plugin_name='napari-nD-annotator', widget_name='Object List') 106 if contrib.plugin_name == plugin_name: 107 if not widget_name or contrib.display_name == widget_name: --> 108 return contrib.get_callable(), contrib.display_name contrib.get_callable = contrib.display_name = 'Object List' 109 widgets_seen.add(contrib.display_name) 110 if widget_name and widgets_seen:
~\AppData\Local\Programs\Python\Python39\lib\site-packages\npe2\manifest\widgets.py in get_callable(self=WidgetContribution(command='napari-nD-annotator...., display_name='Object List', autogenerate=False), _registry=None) 48 self, _registry: Optional[CommandRegistry] = None 49 ) -> Callable[..., Widget]: ---> 50 func = super().get_callable() func = undefined global super.get_callable = undefined 51 if self.autogenerate: 52 from magicgui import magic_factory
~\AppData\Local\Programs\Python\Python39\lib\site-packages\npe2\manifest\utils.py in get_callable(self=WidgetContribution(command='napari-nD-annotator...., display_name='Object List', autogenerate=False), _registry=) 54 55 _registry = PluginManager.instance().commands ---> 56 return _registry.get(self.command) _registry.get = > self.command = 'napari-nD-annotator.object_list_widget' 57 58 @property
~\AppData\Local\Programs\Python\Python39\lib\site-packages\npe2_command_registry.py in get(self=, id='napari-nD-annotator.object_list_widget') 110 if id not in self._commands: 111 raise KeyError(f"command {id!r} not registered") --> 112 return self._commands[id].resolve() self._commands = {'napari-nD-annotator.annotator_widget': CommandHandler(id='napari-nD-annotator.annotator_widget', function=None, python_name='napari_nd_annotator:AnnotatorWidget'), 'napari-nD-annotator.interpolation_widget': CommandHandler(id='napari-nD-annotator.interpolation_widget', function=None, python_name='napari_nd_annotator:InterpolationWidget'), 'napari-nD-annotator.object_list_widget': CommandHandler(id='napari-nD-annotator.object_list_widget', function=None, python_name='napari_nd_annotator:ListWidgetBB')} id.resolve = undefined 113 114 def execute(self, id: str, args=(), kwargs={}) -> Any:
~\AppData\Local\Programs\Python\Python39\lib\site-packages\npe2_command_registry.py in resolve(self=CommandHandler(id='napari-nD-annotator.object_li..., python_name='napari_nd_annotator:ListWidgetBB')) 30 self.function = import_python_name(self.python_name) 31 except Exception as e: ---> 32 raise RuntimeError(f"Failed to import command at {self.python_name!r}: {e}") global RuntimeError = undefined 33 return self.function 34
RuntimeError: Failed to import command at 'napari_nd_annotator:ListWidgetBB': numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject Screenshots If applicable, add screenshots to help explain your problem.
napari info
Other packages napari: 0.4.15 Platform: Windows-10-10.0.19044-SP0 Python: 3.9.12 (tags/v3.9.12:b28265d, Mar 23 2022, 23:52:46) [MSC v.1929 64 bit (AMD64)] Qt: 5.15.2 PyQt5: 5.15.4 NumPy: 1.21.2 SciPy: 1.7.1 Dask: 2021.09.0 VisPy: 0.10.0
OpenGL:
Screens:
Plugins:
pip v 22.2.2