bayesiancook / pbmpi

phylobayes mpi
GNU General Public License v2.0
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mpirun and network interface automatic selection #1

Closed remyd1 closed 7 years ago

remyd1 commented 7 years ago

Hi,

First of all, I am not sure this bug is related to pb_mpi, but anyway, you will be able to mention it in documentation.

So, JFYI, I have some issues with pb_mpi since I installed docker as daemon on our cluster. The problem is that mpi broadcast seems to send messages to other interfaces (like "lo", "docker0"). Then, pb_mpi seems to run, but in fact, it does not do anything.

I am now able to have a pb_mpi working again with:

mpirun --mca btl_tcp_if_exclude lo,docker0 -np .... pb_mpi ....

instead of:

mpirun -np .... pb_mpi ....

Kind regards, Remy

bayesiancook commented 7 years ago

Hi Remy

thanks for the feedback. Not sure yet whether there is anything I can do on the side of pbmpi’s code to fix that, but I am taking note.

best regards

nicolas

Le 16 nov. 2016 à 15:26, DERNAT Rémy notifications@github.com a écrit :

Hi,

First of all, I am not sure this bug is related to pb_mpi, but anyway, you will be able to mention it in documentation.

So, JFYI, I have some issues with pb_mpi since I installed docker as daemon on our cluster. The problem is that mpi broadcast seems to send messages to other interfaces (like "lo", "docker0"). Then, pb_mpi seems to run, but in fact, it does not do anything.

I am now able to have a pb_mpi working again with:

mpirun --mca btl_tcp_if_exclude lo,docker0 -np .... pb_mpi .... instead of:

mpirun -np .... pb_mpi .... Kind regards, Remy

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