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bayesiancook / pbmpi

phylobayes mpi
GNU General Public License v2.0
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Issue compiling pbmpi #10

Closed zhoulhca closed 5 years ago

zhoulhca commented 5 years ago

Hi there,

I am trying to install pbmpi onto a linux ubuntu server. When executing the make command, this is what I get: mpic++ -c -w -O3 -c PB.cpp PB.cpp: In function ‘int main(int, char**)’: PB.cpp:32:34: error: ‘MPI_Type_extent’ was not declared in this scope MPI_Type_extent(MPI_DOUBLE,&dtex); ^ PB.cpp:34:66: error: ‘MPI_Type_struct’ was not declared in this scope MPI_Type_struct(2,blockcounts,displacements,types,&Propagate_arg); ^ make: *** [PB.o] Error 1

Is there something wrong with the server I'm trying to install it in? I'm not quite sure how exactly to fix this issue. Thanks for all the work that you do!

trecakov commented 5 years ago

I just faced the same issue. I do not think its the issue with the server that you are installing. There is an error at PB.cpp file. We should wait for developers to double check this.

bayesiancook commented 5 years ago

Hi, thanks for the feedback. the problem should be fixed now -- can you have a try and tell me if this works now? best, nicolas L

trecakov commented 5 years ago

@bayesiancook This fixes the issue. Thank you! @zhoulhca You may want to try it now.

zhoulhca commented 5 years ago

@bayesiancook No more issues, thank you!