Open lisy87 opened 3 years ago
Hi I ran two chains in PhyloBayes-MPI with the following commands: mpirun -n 24 pb_mpi -d alig.phy -catfix C20 -lg -t intree.tree chain_0 mpirun -n 24 pb_mpi -d alig.phy -catfix C20 -lg -t intree.tree chain_1 I stopped the chains after 10000 generations. tail chain_0.trace 10650 353.805 93 -1195936.045 0.2836247507 0.146153911 20 2.427761501 20 10651 339.699 92 -1195329.104 0.2837520955 0.1446938163 20 2.428734088 20 10652 353.853 92 -1195153.129 0.2843045745 0.1452920026 20 2.427999614 20 tail chain_1.trace 10668 362.94 93 -1195727.005 0.2851022857 0.1412945893 20 2.428278018 20 10669 358.809 93 -1195032.63 0.285462945 0.1458959495 20 2.427681612 20 10670 359.08 93 -1195585.968 0.2865275251 0.1460400457 20 2.427547846 20 I stopped the runs softly with: echo 0 > chain_0.run echo 0 > chain_1.run Then, I ran: tracecomp chain_0 chain_1 setting upper limit to : 10539 chain_0.trace burnin : 2107 sample size : 8432 chain_1.trace burnin : 2107 sample size : 8432 name effsize rel_diff
loglik 3 0.00649395 length 3 1.67442 alpha 3 1.81706 Nmode 4217 1.90942 statent 3 1.87607 statalpha 3 1.89889
And I obtained those bad numbers
Then I ran: bpcomp chain_0 chain_1
chain_0.treelist error ( and I obtained an error with the tree file.
What would be happening?? Could you help me please? Thanks, lisy
Hi I ran two chains in PhyloBayes-MPI with the following commands: mpirun -n 24 pb_mpi -d alig.phy -catfix C20 -lg -t intree.tree chain_0 mpirun -n 24 pb_mpi -d alig.phy -catfix C20 -lg -t intree.tree chain_1 I stopped the chains after 10000 generations. tail chain_0.trace 10650 353.805 93 -1195936.045 0.2836247507 0.146153911 20 2.427761501 20 10651 339.699 92 -1195329.104 0.2837520955 0.1446938163 20 2.428734088 20 10652 353.853 92 -1195153.129 0.2843045745 0.1452920026 20 2.427999614 20 tail chain_1.trace 10668 362.94 93 -1195727.005 0.2851022857 0.1412945893 20 2.428278018 20 10669 358.809 93 -1195032.63 0.285462945 0.1458959495 20 2.427681612 20 10670 359.08 93 -1195585.968 0.2865275251 0.1460400457 20 2.427547846 20 I stopped the runs softly with: echo 0 > chain_0.run echo 0 > chain_1.run Then, I ran: tracecomp chain_0 chain_1 setting upper limit to : 10539 chain_0.trace burnin : 2107 sample size : 8432 chain_1.trace burnin : 2107 sample size : 8432 name effsize rel_diff
loglik 3 0.00649395 length 3 1.67442 alpha 3 1.81706 Nmode 4217 1.90942 statent 3 1.87607 statalpha 3 1.89889
And I obtained those bad numbers
Then I ran: bpcomp chain_0 chain_1
chain_0.treelist error ( and I obtained an error with the tree file.
What would be happening?? Could you help me please? Thanks, lisy