bayesiancook / pbmpi

phylobayes mpi
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Proper way how to restart a chain #28

Closed RekwalD closed 2 years ago

RekwalD commented 2 years ago

Hi, I want to ask about proper way how to restart failed chain. I'm sorry if this is not the right place to ask. My version is v1.8c Starting command for chain looked like this _mpirun -np $PBS_NCPUS pb_mpi -d $INPUT -S -dc -cat -gtr -x 2 25000 $RUNID and my questions is if restart command should look like this _mpirun -np $PBS_NCPUS pb_mpi $RUNID or like this _mpirun -np $PBS_NCPUS pb_mpi $RUNID -S -dc -cat -gtr -x 2 25000

Thank you very much for your answer.

RekwalD commented 2 years ago

answer is mpirun -np $PBS_NCPUS pb_mpi $RUN_ID

restart with parameters doesn't work so I assume the former is correnct

closing