bayesiancook / pbmpi

phylobayes mpi
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bpcomp error #3

Closed xvazquezc closed 7 years ago

xvazquezc commented 7 years ago

Hi, I recently started to use PB_MPI and so far so good. However, whenever I try to run bpcomp I get the following error:

phylogeny/pb/mychain1.treelist assuming labels in tree file, but leaf labels out of range
label equals 76547503 (should be between 0 and 250)
error when registering tree with data: did not find taxon  in tree

I tried the version direct from PB 4.1c and even recompiling but I keep seeing the same error. Any idea what could be causing it? tracecomp runs without problem though

nicrodrigue commented 7 years ago

Hello,

Are some of the sequences in your alignment labeled with numbers only (without any letters)? If so, bpcomp may mis-parse trees, confusing your sequence labels for other things.

Nic

On Apr 18, 2017, at 8:46 PM, xvazquezc notifications@github.com<mailto:notifications@github.com> wrote:

Hi, I recently started to use PB_MPI and so far so good. However, whenever I try to run bpcomp I get the following error:

phylogeny/pb/mychain1.treelist assuming labels in tree file, but leaf labels out of range label equals 76547503 (should be between 0 and 250) error when registering tree with data: did not find taxon in tree

I tried the version direct from PB 4.1c and even recompiling but I keep seeing the same error. Any idea what could be causing it? tracecomp runs without problem though

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xvazquezc commented 7 years ago

Yes they do, I substituted those IDs and it works now. Thanks