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bayesiancook / pbmpi

phylobayes mpi
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How to compute the site-specific state equilibrium frequencies for each MCMC generation? #37

Closed ZQ1126 closed 10 months ago

ZQ1126 commented 10 months ago

Hi, According to your manual, I know that readpb_mpi with the -ss command can obtain the mean posterior site-specific state equilibrium frequencies (i.e., profile). However, now I want to obtain the profile for each generation of MCMC. I did not find relevant instructions in the manual. Could you please provide some advice? I have tried the following: mpirun -np 56 readpb_mpi -x 13009 1 13010 -ss chainname but I am not sure if this will obtain the profile for generation 13010. I look forward to receiving your reply, thank you.

bayesiancook commented 10 months ago

Hi, yes, that's exactly that. best, bayesiancook

bayesiancook commented 10 months ago

closed