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bbglab / bbgwiki

Website with info of all the tools and data used in the bbglab
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Compute trinucleotide content of a genome #77

Open FerriolCalvet opened 10 months ago

FerriolCalvet commented 10 months ago

This is a link to the code that Claudia used for computing the trinucleotide content of a genome. Could be added in the wiki I don't know if in bbg tools or where.

https://github.com/bbglab/hotspot_propensity/blob/main/analysis/mappable_genome/2_analyse_sequence_mappable_genome.ipynb

FerriolCalvet commented 4 months ago

This is a link to a location where there are trinucleotide counts of different genomes that can be used for different purposes. Normalizing signatures at different levels. https://github.com/AlexandrovLab/SigProfilerMatrixGenerator/tree/master/SigProfilerMatrixGenerator/references/chromosomes/context_distributions