bbglab boostdm-pipeline issues

bbglab / boostdm-pipeline

Learning pipeline to identify somatic SNVs under positive selection.

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Remove boostwrap dependency

#23 koszulordie opened 4 weeks ago
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Refactor BoostDM Package

#22 FedericaBrando opened 1 month ago
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ALP integration | Output annotations for every gene-ttype in IntOGen and gene-CANCER

#21 FedericaBrando opened 1 month ago
1
Check skipping of mutation with consequence variant: stop_retained_variant

#20 FedericaBrando opened 2 months ago
1
BoostDM 2024 pipeline version

#19 FedericaBrando closed 2 months ago
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Dev/output plots

#18 koszulordie closed 2 months ago
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Driver imputation/masking post-processing step

#17 koszulordie opened 2 months ago
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Update NMD rule

#16 koszulordie opened 3 months ago
1
NEW step in the pipeline to conduct benchmarking

#15 koszulordie closed 3 months ago
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Dev/benchmarks

#14 koszulordie closed 3 months ago
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New step that generates output plots

#13 koszulordie closed 3 months ago
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develop | Discovery index failed for some tumor types

#12 koszulordie closed 5 months ago
2
Should boostDM exceptions be handled as errors?

#11 koszulordie opened 6 months ago
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develop | specify a path for the nextflow work directory

#10 koszulordie closed 6 months ago
1
develop | CreateDatasets fails with the ICGC_WXS_HCC_LIHM_FR_2019 cohort

#9 koszulordie closed 6 months ago
1
Dev/prediction format

#8 koszulordie closed 6 months ago
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BoostDM | Update consequence type to ensembl 111

#7 FedericaBrando closed 6 months ago
2
toy commit

#6 koszulordie closed 6 months ago
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Prediction output formatting

#5 koszulordie closed 6 months ago
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Adapt BoostDM pipeline to accept MANE transcript

#4 FedericaBrando closed 6 months ago
0
BoostDM | `vep.tsv.gz` missing regions

#3 FedericaBrando closed 6 months ago
2
BoostDM | Implement MANE transcript

#2 FedericaBrando closed 6 months ago
1
BoostDM | `encode_consequence_type(data)` inconsinstent when missing consequence.

#1 FedericaBrando opened 11 months ago
0