IntOGen v2024 | Check FAIL cohorts

bbglab / intogen-plus

a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.

https://www.intogen.org/search

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Closed FedericaBrando closed 5 months ago

FedericaBrando commented 5 months ago

Run started on Thursday 14/03/24.

Waiting for ending so failing cohort can be analysed.

Expected FAILS:

FedericaBrando commented 5 months ago

cohorts: ICGC_WXS_CML_CMDI_UK_2019, ICGC_WXS_WDTC_THCA_CN_2019
error: intogen_core.parsers.DatasetError: The ratio of missense / synonymous variants is too high
cohort: ICGC_WGS_CCRCC_RECA_EU_2019
error: intogen_core.parsers.DatasetError: There are only 2 synonymous variants

cohort : ICGC_WXS_HCC_LIHM_FR_2019
error:oncodriveclustl.utils.exceptions.UserInputError: No element found with enough mutations to perform analysis