IntOGen plus | data build - HotMAPS pdb download fail

bbglab / intogen-plus

a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.

https://www.intogen.org/search

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IntOGen plus | data build - HotMAPS pdb download fail #9

Closed FedericaBrando closed 10 months ago

FedericaBrando commented 10 months ago

https://groups.google.com/a/rcsb.org/g/api/c/DYVPwszEzqk

FedericaBrando commented 10 months ago

fix:

Given this file provided by them:

https://files.wwpdb.org/pub/pdb/software/rsyncPDB.sh

The following line was changed in biounit.sh

-    rsync -rptz -v --copy-links --port=33444 ftp.rcsb.org::ftp_data/biounit/coordinates/all/*.pdb1.gz ${tmpdir}/
+    rsync -rptz --info=progress2 --stats --copy-links --port=33444 rsync.wwpdb.org::ftp/data/biounit/coordinates/all/*.pdb1.gz ${tmpdir}/