bbolker / glmmadmb

generalized linear mixed models with AD Model Builder
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Proposed new output #13

Open Cole-Monnahan-NOAA opened 2 years ago

Cole-Monnahan-NOAA commented 2 years ago

This serves as an FYI to the glmmadmb devs that a new proposed update to ADMB will effect console output. Please see

https://github.com/admb-project/admb/discussions/219

If I run this on the packaged glmmadmb example in ADMB below is what the new output looks like.

Please let me know if you have any concerns or feedback.

Starting RE optimization of 'glmmadmb' in phase 1 of 4 at Mon Nov 29 11:58:53 2021
phase= 1 | nvar=  4 | iter=  0 | nll=5.787e+02 | mgc=+4.238e+00
phase= 3 | nvar=  6 | iter=  0 | nll=5.576e+02 | mgc=+2.482e+00
phase= 3 | nvar=  6 | iter= 10 | nll=5.353e+02 | mgc=-1.187e-02
phase= 3 | nvar=  6 | iter= 20 | nll=4.736e+02 | mgc=-9.907e-01
phase= 3 | nvar=  6 | iter= 30 | nll=3.460e+02 | mgc=+3.029e+00
phase= 3 | nvar=  6 | iter= 40 | nll=3.233e+02 | mgc=+1.486e-03
Hessian type 4
phase= 4 | nvar= 11 | iter=  0 | nll=2.245e+02 | mgc=+4.616e-01
phase= 4 | nvar= 11 | iter= 10 | nll=2.172e+02 | mgc=-1.511e-01
phase= 4 | nvar= 11 | iter= 20 | nll=2.148e+02 | mgc=-1.065e-01
phase= 4 | nvar= 11 | iter= 30 | nll=2.135e+02 | mgc=+6.719e-02
phase= 4 | nvar= 11 | iter= 40 | nll=2.053e+02 | mgc=-1.026e-01
phase= 4 | nvar= 11 | iter= 50 | nll=2.028e+02 | mgc=-1.181e-02
phase= 4 | nvar= 11 | iter= 60 | nll=2.027e+02 | mgc=+4.069e-02
phase= 4 | nvar= 11 | iter= 70 | nll=2.008e+02 | mgc=-9.441e-02
phase= 4 | nvar= 11 | iter= 80 | nll=2.007e+02 | mgc=+1.070e-02
phase= 4 | nvar= 11 | iter= 90 | nll=1.990e+02 | mgc=-1.407e-02
phase= 4 | nvar= 11 | iter=100 | nll=1.987e+02 | mgc=-5.636e-03
phase= 4 | nvar= 11 | iter=110 | nll=1.987e+02 | mgc=+7.416e-04
phase= 4 | nvar= 11 | iter=120 | nll=1.987e+02 | mgc=-6.544e-03
phase= 4 | nvar= 11 | iter=130 | nll=1.987e+02 | mgc=+2.084e-04
Optimization complete with final statistics:
phase= 4 | nvar= 11 | iter=138 | nll=1.987e+02 | mgc=+6.074e-06

Calculating Hessian: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100%... done!
Applying delta method to dependent variables... done!
Inverting Hessian: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100%... done!
Starting standard error calculations... done!

Finished running model 'glmmadmb' after 40.26 seconds.