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bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.
GNU General Public License v3.0
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All-versus-all, Error code 1 #734

Open kat-king opened 1 year ago

kat-king commented 1 year ago

Hi,

I'm trying to rerun OrthoFinder and I am running into an error when diamond is called to run all-versus-all. It returns error code 1 and I'm not sure what it means. Back in April it ran fine with no errors. Any help in this would be greatly appreciated :)

Here is the error message:

Running diamond all-versus-all

Using 20 thread(s) 2023-09-04 15:33:40 : This may take some time....

ERROR: external program called by OrthoFinder returned an error code: 1

Command: diamond blastp -d /crex/proj/snic2020-15-221/transporters/orthofinder_BUSCO/fasta_dir/OrthoFinder/Results_Sep04/WorkingDirectory/diamondDBSpecies44 -q /crex/proj/snic2020-15-221/transporters/orthofinder_BUSCO/fasta_dir/OrthoFinder/Results_Sep04/WorkingDirectory/Species82.fa -o /crex/proj/snic2020-15-221/transporters/orthofinder_BUSCO/fasta_dir/OrthoFinder/Results_Sep04/WorkingDirectory/Blast82_44.txt --more-sensitive -p 1 --quiet -e 0.001 --compress 1

stdout

b'' stderr

b'Protocol error\nError: Error writing file /crex/proj/snic2020-15-221/transporters/orthofinder_BUSCO/fasta_dir/OrthoFinder/Results_Sep04/WorkingDirectory/diamond-tmp-w8v7xt\n' 2023-09-05 12:34:52 : Done 9000 of 11664

ERROR: external program called by OrthoFinder returned an error code: 1

Thanks!

bbuchfink commented 1 year ago

Error writing file would indicate that the disk is full or you don't have write permissions to that directory.