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bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.
GNU General Public License v3.0
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Alternative translation tables #742

Closed wwood closed 9 months ago

wwood commented 9 months ago

Hi,

Is there an option for DIAMOND blastx to use alternative translation tables? I couldn't see one documented or in a quick look through the code.

I'm particularly interested in table 4, fwiw.

Thanks in advance, ben

bbuchfink commented 9 months ago

The option should be --query-gencode, same codes as blast.

wwood commented 9 months ago

Ah, somehow missed that in both searches - unlucky. Anyway, that solves it, thanks.