Blast running in a loop for nanopore data

bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.

GNU General Public License v3.0

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Blast running in a loop for nanopore data #746

Open bioinfo23 opened 8 months ago

bioinfo23 commented 8 months ago

Hi ! I am using diamond blast (blastx) to align nanopore reads against NR database. The process runs fine until the last bin but suddenly gets in a loop and restarts the complete process again. It works fine on 1000 reads but dowmsampling to 1 million also shows same issue without throwing any error.

bbuchfink commented 8 months ago

I'm not sure I fully understand, can you run diamond with the --log option and send me the resulting diamond.log file?