Question: Force all vs all alignment?

bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.

GNU General Public License v3.0

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Question: Force all vs all alignment? #782

Closed paoslaos closed 5 months ago

paoslaos commented 5 months ago

Dear Developers,

Thanks a lot for a great tool! I was wondering if I can force the blastp command to do an exhaustive all vs. all alignment? I am not interested in very accurate alignments but rather in getting a distance matrix. Thanks!

bbuchfink commented 5 months ago

You can use the option --swipe to do that.

paoslaos commented 5 months ago

Oh true .. completely missed the doc string for that. Apologies! thank you!