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bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.
GNU General Public License v3.0
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Diamond view throws segmentation fault (core dumped) error #796

Open SaimMomin12 opened 6 months ago

SaimMomin12 commented 6 months ago

Hi,

I have a Diamond DAA file (ultimately small in size) which was the ouput from Diamond blastx tool using the lastest version.

When I try to convert the DAA file to XML file using the following command, I get segmentation fault(core dumped) error.

diamond view --threads 8 --daa results.daa --outfmt 5 --max-target-seqs 1 --out result.xml

Error traceback as follows

CPU threads: 8

Scoring parameters: (Matrix=blosum62 Lambda=0.267 K=0.041 Penalties=11/1) DB sequences = 2 DB sequences used = 2 DB letters = 568

Target sequences to report alignments for: 1

Segmentation fault (core dumped)

Any suggestions how can this be solved?

bbuchfink commented 4 months ago

If you provide a copy of your DAA file I can have a look.