bc / retina

Tools for visualizing and comparing data from vertebrate retinas
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Mapping the "convergence ratio" #18

Closed lschmitz closed 6 years ago

lschmitz commented 7 years ago

Let's assume a user has counts for both retinal ganglion cells and photoreceptors for the same retina. Let's further assume that these cell counts come from different sampling locations.

How can we implement the mapping of the convergence ratio (= photoreceptor/RGC)?

I suggest following an approach guided by the average map function (composite_map).

briancohn commented 7 years ago

if they're at different sampling locations then there's many approaches one way could be to create a thin plate spline for each, then simply divide one surface by the other at each of N gridpoints, plotting the ratio across the retina

lschmitz commented 7 years ago

that's basically the approach from composite_map right? (well, except we need division, not the mean)