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bcbio / bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
https://bcbio-nextgen.readthedocs.io
MIT License
986 stars 354 forks source link

Add support for VarScan in CNV mode #168

Closed mjafin closed 10 years ago

mjafin commented 10 years ago

VarScan2 has support for copy number variation analysis but I don't think it's supported in bcbio yet, am I correct?

chapmanb commented 10 years ago

Miika; No, not yet. This is a likely target once we have a framework in place for calling and evaluating callers. I added it to our todo list as something to tackle.