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bcbio / bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
https://bcbio-nextgen.readthedocs.io
MIT License
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missing executable flags on .sh scripts in config/examples #2984

Open smoe opened 4 years ago

smoe commented 4 years ago

Please tell me ff you prefer a pull request. Cheers, Steffen

W: bcbio: script-not-executable usr/share/bcbio/config/examples/HCC2218-sv-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/NA12878-exome-methodcmp-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/NA12878-hg38-validate-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/NA12878-sv-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/NA12878-trio-wgs-validate-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/NA24385-10x-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/archived/NA12878-trio-sv-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/cancer-dream-syn3-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/cancer-giab-na12878-na24385-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/giab-validate-setup.sh
W: bcbio: script-not-executable usr/share/bcbio/config/examples/rnaseq-seqc-getdata.sh
W: bcbio: script-not-executable usr/share/bcbio/config/teaching/cancer-syn3-chr6-prep.sh
roryk commented 4 years ago

Thanks @smoe,

Good catch, a pull request would be nice!