Closed TomGardner closed 2 years ago
Hi @TomGardner !
Thanks for reporting and sorry about the issues! Currently bcbio_vm and cwl functionality is not available, there are numerous issues. We are planning to put more work into this aspect of bcbio during this summer, see release planning https://github.com/bcbio/bcbio-nextgen/issues/3242
If you need that ASAP, take a look into https://github.com/nextflow-io/awesome-nextflow
Version info
bcbio_nextgen.py --version
): 1.2.7lsb_release -ds
): Ubuntu 18.04.5 LTSTo Reproduce Exact bcbio command you have used:
Your sample configuration file:
Observed behavior Error message or bcbio output:
Expected behavior A clear and concise description of what you expected to happen. It to not fail. Log files Please attach (10MB max):
bcbio-nextgen.log
,bcbio-nextgen-commands.log
, andbcbio-nextgen-debug.log
.Additional context Add any other context about the problem here.