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bcbio / bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
https://bcbio-nextgen.readthedocs.io
MIT License
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Hisat 2 error #3742

Open Maria6642 opened 6 months ago

Maria6642 commented 6 months ago

Hi everyone am trying to run my RNA raw data on subioplatform using macOS m2 chip but I successfully get my results from fast but when the hisat2 started it gives error please need help. I installed the tools via anaconda and also if anyone guide me how I cam give access to my script to terminal so I can run my tools.

Log files (could be found in work/log) Please attach (10MB max): bcbio-nextgen-commands.log, and bcbio-nextgen-debug.log.

lpantano commented 6 months ago

Hi,

I am un-familiar with subioplatform. I understood you installed bcbio with anaconda? I am not sure what do you mean with the last sentence. Do you have the logs for bcbio-nextgen? or you cannot access it? If subioplatform is running bcbio for you, maybe you can contact them how you can get access to the logs.

Let me know,