Closed schelhorn closed 9 years ago
Sven-Eric; Sorry about the issue. I'm not able to reproduce this so am not sure about the underlying cause but pushed a small fix based on the error I'm hoping might resolve it. Would you be able to test with this to see if it solves it?
Sven-Eric;
I was able to reproduce this today, and it's due to a change in bedtools coverage
function in the new release (2.24.0). Previously we did bedtools coverage -a file.bam -b regions.bed
but the new syntax is bedtools coverage -a regions.bed -b file.bam
. Swapping this over fixes the issue, so if you upgrade to the latest code it should now work cleanly. Sorry about the problem and thanks again for reporting it.
Thanks a lot for the quick fix!
I get an error in the coverage plot module: