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bcbio / bcbioR

R package with well defined templates for most common pipelines
https://bcbio.github.io/bcbioR/
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Adapt DE report to nf-core #15

Closed lpantano closed 5 months ago

lpantano commented 6 months ago

Add variables to params_de.R for nf-core files.

Create a R function file that would be loaded by DEG.Rmd with a function that will create the count and metrics variable that will be used by DEG.Rmd code downstream.