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bcbio / bcbioR

R package with well defined templates for most common pipelines
https://bcbio.github.io/bcbioR/
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load metrics for non- mouse / human. #55

Open eberdan opened 2 days ago

eberdan commented 2 days ago

Had to use different code to load metrics for c.elegans. My code (old bcbioR code):

se <- readRDS(se_object) #local

metrics <- metadata(se)$metrics %>% 
    full_join(meta_df , by = c("sample" = "sample"))
lpantano commented 14 hours ago

can you point me to the input data so I can see the problem, probably is the gene annotation that is different character patterns.