bccp / nbodykit

Analysis kit for large-scale structure datasets, the massively parallel way
http://nbodykit.rtfd.io
GNU General Public License v3.0
111 stars 60 forks source link

Problem with nbodykit.plugins.datasource #619

Closed andrea0292 closed 4 years ago

andrea0292 commented 4 years ago

Dear Yu,

I have been trying to install Nbodykit; as suggested I used Anaconda to do it, following the instructions in your page (creating a new env). The installation goes smoothly, however when I then try to use it in my Jupyter notebook I get errors. I tried to update conda, so all the packages should be ok. Do you have any clue of the problem? Maybe Python version? The error I get reads as follows

"ModuleNotFoundError Traceback (most recent call last)

in ----> 1 from nbodykit.lab import * 2 from nbodykit import style, setup_logging 3 4 import matplotlib.pyplot as plt ~/anaconda3/lib/python3.7/site-packages/nbodykit/__init__.py in ----> 1 from nbodykit.pluginmanager import load_builtins 2 import os 3 4 load_builtins() 5 ~/anaconda3/lib/python3.7/site-packages/nbodykit/pluginmanager.py in 10 import nbodykit.plugins 11 import nbodykit.plugins.algorithms ---> 12 import nbodykit.plugins.datasource 13 import nbodykit.plugins.painter 14 import nbodykit.plugins.transfer ModuleNotFoundError: No module named 'nbodykit.plugins.datasource' " Thanks a lot in advance, Andrea
rainwoodman commented 4 years ago

My gut feeling is that you got an very old version of nbodykit (0.1.x).

What do you get with conda list?

Did you see any warnings from conda (e.g. conflicting packages) when installing nbodykit?

andrea0292 commented 4 years ago

Dear Yu,

thanks a lot for the fast reply! This is the conda list I get, and no I didn’t get any Warning during the installation apparently..I also tried with the Source installation but doesn’t seem to help..

A

21cmfast 3.0.0.dev0 pypi_0 pypi _anaconda_depends 2019.03 py37_0 _ipyw_jlab_nb_ext_conf 0.1.0 py37_0 _r-mutex 1.0.1 anacondar_1 conda-forge alabaster 0.7.12 py37_0 anaconda custom py37_1 anaconda-client 1.7.2 py37_0 anaconda-navigator 1.9.2 py37_0 anaconda-project 0.8.4 py_0 appnope 0.1.0 py37_0 appscript 1.1.0 py37h1de35cc_0 asgiref 3.2.7 pypi_0 pypi asn1crypto 1.3.0 py37_0 astroid 2.3.3 py37_0 astropy 3.2.3 py37h1de35cc_0 atomicwrites 1.3.0 py37_1 attrs 19.3.0 py_0 autobahn 18.12.1 pypi_0 pypi autograd 1.3 pypi_0 pypi autograde 0.1.1 pypi_0 pypi babel 2.8.0 py_0 backcall 0.1.0 py37_0 backports 1.0 py_2 backports.os 0.1.1 py37_0 backports.shutil_get_terminal_size 1.0.0 py37_2 beautifulsoup4 4.8.2 py37_0 bigfile 0.1.49 py37h776bbcc_7 bccp bitarray 1.2.1 py37h1de35cc_0 bkcharts 0.2 py37_0 blas 1.0 mkl bleach 3.1.0 py37_0 blosc 1.16.3 hd9629dc_0 bokeh 1.4.0 py37_0 boto 2.49.0 py37_0 bottleneck 1.3.1 py37h1d22016_0 build 1.0.2 pypi_0 pypi bwidget 1.9.14 0 conda-forge bzip2 1.0.8 h1de35cc_0 ca-certificates 2020.4.5.1 hecc5488_0 conda-forge cached-property 1.5.1 pypi_0 pypi cachey 0.2.1 py37_0 bccp cairo 1.16.0 h0ab9d94_1001 conda-forge camb 1.0.8 pypi_0 pypi cartopy 0.17.0 py37h95120c7_1007 conda-forge casjobs 0.0.1 pypi_0 pypi cctools 895 h7512d6f_0 certifi 2020.4.5.1 py37_0 anaconda cffi 1.13.2 py37hb5b8e2f_0 cfitsio 3.470 h389770f_2 conda-forge chardet 3.0.4 py37_1003 clang 4.0.1 h662ec87_0 anaconda clang_osx-64 4.0.1 h1ce6c1d_17 conda-forge clangxx 4.0.1 hc9b4283_0 conda-forge clangxx_osx-64 4.0.1 h22b1bf0_17 conda-forge classy 2.7.2 pypi_0 pypi classylss 0.2.9 py37hd5f3a30_7 bccp click 7.0 py37_0 cloog 0.18.0 0 anaconda cloudpickle 1.3.0 py_0 clyent 1.2.2 py37_1 cmasher 1.2.2 pypi_0 pypi colorama 0.4.3 py_0 colorspacious 1.1.2 pypi_0 pypi compiler-rt 4.0.1 h5487866_0 conda 4.8.3 py37hc8dfbb8_1 conda-forge conda-build 3.15.1 py37_0 conda-env 2.6.0 1 conda-package-handling 1.6.0 py37h1de35cc_0 contextlib2 0.6.0.post1 py_0 corner 2.0.1 pypi_0 pypi corrfunc 2.3.0 py37h776bbcc_10 bccp coverage 5.1 py37h9bfed18_0 conda-forge cryptography 2.8 py37ha12b0ac_0 curl 7.68.0 ha441bb4_0 cycler 0.10.0 py37_0 cython 0.29.14 pypi_0 pypi cytoolz 0.10.1 py37h1de35cc_0 dask 2.10.1 py_0 dask-core 2.10.1 py_0 dbus 1.13.12 h90a0687_0 decorator 4.4.1 py_0 defusedxml 0.6.0 py_0 dill 0.3.1.1 pypi_0 pypi distributed 2.10.0 py_0 django 3.0.5 pypi_0 pypi django-extensions 2.2.9 pypi_0 pypi django-tastypie 0.14.3 pypi_0 pypi docutils 0.16 py37_0 emcee 2.2.1 pypi_0 pypi entrypoints 0.3 py37_0 et_xmlfile 1.0.1 py37_0 expat 2.2.6 h0a44026_0 fastcache 1.1.0 py37h1de35cc_0 fftw 3.3.8 nompi_h5c49c53_1106 conda-forge filelock 3.0.12 py_0 fitsio 1.1.1 py37h234edc7_2 conda-forge flask 1.1.1 py_0 fontconfig 2.13.1 h1027ab8_1000 conda-forge freetype 2.9.1 hb4e5f40_0 fribidi 1.0.9 h0b31af3_0 conda-forge fsspec 0.6.2 py_0 future 0.18.2 py37hc8dfbb8_1 conda-forge gcc 4.8.5 8 anaconda geos 3.7.2 h6de7cb9_2 conda-forge get_terminal_size 1.0.0 h7520d66_0 gettext 0.19.8.1 h15daf44_3 gevent 1.4.0 py37h1de35cc_0 gfortran_osx-64 4.8.5 h22b1bf0_8 anaconda glib 2.63.1 hd977a24_0 glob2 0.7 py_0 gmp 6.1.2 hb37e062_1 gmpy2 2.0.8 py37h6ef4df4_2 graph 1.11 h0bee7d0_0 conda-forge graphite2 1.3.13 h2098e52_1000 conda-forge greenlet 0.4.15 py37h1de35cc_0 gsl 2.4 h1de35cc_4 gwdet 0.1.1 pypi_0 pypi h5py 2.8.0 py37h878fce3_3 halotools 0.7 py37h6c726b0_5 bccp harfbuzz 2.4.0 h92b87b8_1 conda-forge hdf5 1.10.2 hfa1e0ec_1 healpy 1.12.10 py37h2c3d0c3_0 conda-forge heapdict 1.0.1 py_0 html5lib 1.0.1 py37_0 hypothesis 5.4.1 py_0 icu 58.2 h4b95b61_1 idna 2.8 py37_0 imageio 2.6.1 py37_0 imagesize 1.2.0 py_0 iminuit 1.3.7 py37h86efe34_0 conda-forge importlib_metadata 1.5.0 py37_0 intel-openmp 2019.4 233 ipykernel 5.1.4 py37h39e3cac_0 ipython 7.12.0 py37h5ca1d4c_0 ipython_genutils 0.2.0 py37_0 ipywidgets 7.5.1 py_0 isl 0.12.2 1 anaconda isort 4.3.21 py37_0 itsdangerous 1.1.0 py37_0 jbig 2.1 h4d881f8_0 jdcal 1.4.1 py_0 jedi 0.16.0 py37_0 jinja2 2.11.1 py_0 joblib 0.14.1 py_0 jpeg 9b he5867d9_2 json5 0.9.1 py_0 jsonschema 3.2.0 py37_0 julia 0.4.1 pypi_0 pypi jupyter 1.0.0 py37_7 jupyter_client 5.3.4 py37_0 jupyter_console 6.1.0 py_0 jupyter_core 4.6.1 py37_0 jupyterlab 1.2.6 pyhf63ae98_0 jupyterlab_server 1.0.6 py_0 kdcount 0.3.29 py37h776bbcc_5 bccp keyring 21.1.0 py37_0 kiwisolver 1.1.0 py37h0a44026_0 krb5 1.17.1 hddcf347_0 kwant 1.4.1 pypi_0 pypi lazy-object-proxy 1.4.3 py37h1de35cc_0 ld64 274.2 h7c2db76_0 libarchive 3.3.3 h786848e_5 libcurl 7.68.0 h051b688_0 libcxx 4.0.1 h579ed51_0 libcxxabi 4.0.1 hebd6815_0 libedit 3.1.20181209 hb402a30_0 libffi 3.2.1 h475c297_4 libgfortran 3.0.1 h93005f0_2 libiconv 1.15 hdd342a3_7 liblief 0.9.0 h2a1bed3_2 libpng 1.6.37 ha441bb4_0 libsodium 1.0.16 h3efe00b_0 libssh2 1.8.2 ha12b0ac_0 libtiff 4.1.0 hcb84e12_0 libxml2 2.9.9 hf6e021a_1 libxslt 1.1.33 h33a18ac_0 ligo-segments 1.2.0 pypi_0 pypi llvm 4.0.1 hc748206_0 llvm-lto-tapi 4.0.1 h6701bc3_0 llvm-openmp 4.0.1 hcfea43d_1 llvmlite 0.31.0 py37h1341992_0 locket 0.2.0 py37_1 lscsoft-glue 2.0.0 pypi_0 pypi lxml 4.5.0 py37hef8c89e_0 lz4-c 1.8.1.2 h1de35cc_0 lzo 2.10 h362108e_2 mako 1.1.0 pypi_0 pypi markupsafe 1.1.1 py37h1de35cc_0 matplotlib 3.1.3 py37_0 matplotlib-base 3.1.3 py37h9aa3819_0 mccabe 0.6.1 py37_1 mcfit 0.0.16 py37h5ca1d4c_1 bccp mcint 0.1.dev5 pypi_0 pypi mistune 0.8.4 py37h1de35cc_0 mkl 2019.4 233 mkl-service 2.3.0 py37hfbe908c_0 mkl_fft 1.0.15 py37h5e564d8_0 mkl_random 1.1.0 py37ha771720_0 more-itertools 8.2.0 py_0 mpc 1.1.0 h6ef4df4_1 mpfr 4.0.1 h3018a27_3 mpi 1.0 mpich mpi4py 3.0.3 py37h77202c6_0 mpich 3.3.2 hc856adb_0 mpld3 0.3 pypi_0 pypi mpmath 1.1.0 py37_0 mpsort 0.1.17 py37h62e6fb7_9 bccp msgpack-python 0.6.1 py37h04f5b5a_1 multipledispatch 0.6.0 py37_0 multiprocess 0.70.9 pypi_0 pypi navigator-updater 0.2.1 py37_0 nbconvert 5.6.1 py37_0 nbformat 5.0.4 py_0 ncurses 6.1 h0a44026_1 networkx 2.4 py_0 nltk 3.4.5 py37_0 nose 1.3.7 py37_2 notebook 6.0.3 py37_0 numba 0.48.0 py37h6c726b0_0 numexpr 2.7.1 py37hce01a72_0 numpy 1.17.4 pypi_0 pypi numpy-base 1.18.1 py37h6575580_1 numpydoc 0.9.2 py_0 olefile 0.46 py37_0 opencv-python 3.4.2.16 pypi_0 pypi openpyxl 3.0.3 py_0 openssl 1.1.1g h0b31af3_0 conda-forge owslib 0.19.2 py_1 conda-forge packaging 20.1 py_0 palettable 3.3.0 pypi_0 pypi pandas 0.25.3 py37h0a44026_0 pandoc 2.2.3.2 0 pandocfilters 1.4.2 py37_1 pango 1.42.4 haa940fe_4 conda-forge parso 0.6.1 py_0 partd 1.1.0 py_0 path 13.1.0 py37_0 path.py 12.4.0 0 pathlib2 2.3.5 py37_0 pathos 0.2.5 pypi_0 pypi patsy 0.5.1 py37_0 pcre 8.43 h0a44026_0 pep8 1.7.1 py37_0 pexpect 4.8.0 py37_0 pfft-python 0.1.21 py37h62e6fb7_10 bccp pickleshare 0.7.5 py37_0 pillow 7.0.0 py37h4655f20_0 pip 19.3.1 pypi_0 pypi pixman 0.38.0 h01d97ff_1003 conda-forge pkginfo 1.5.0.1 py37_0 pluggy 0.13.1 py37_0 ply 3.11 py37_0 pmesh 0.1.55 py37h776bbcc_5 bccp powerbox 0.6.0 pypi_0 pypi pox 0.2.7 pypi_0 pypi ppft 1.6.6.1 pypi_0 pypi progressbar 2.5 pypi_0 pypi proj4 6.1.1 hca663eb_1 conda-forge prometheus_client 0.7.1 py_0 prompt_toolkit 3.0.3 py_0 psrqpy 1.0.0 pypi_0 pypi psutil 5.6.7 py37h1de35cc_0 ptyprocess 0.6.0 py37_0 py 1.8.1 py_0 py-lief 0.9.0 py37h1413db1_2 pycbc 1.15.1 pypi_0 pypi pycodestyle 2.5.0 py37_0 pycosat 0.6.3 py37h1de35cc_0 pycparser 2.19 py37_0 pycrypto 2.6.1 py37h1de35cc_9 pycurl 7.43.0.5 py37ha12b0ac_0 pyepsg 0.4.0 py_0 conda-forge pyfftw 0.11.1 py37h0aba3d0_1002 conda-forge pyflakes 2.1.1 py37_0 pyflation 0.2.3 pypi_0 pypi pygments 2.5.2 py_0 pykdtree 1.3.1 py37h10e2902_1003 conda-forge pylians3 3.0 pypi_0 pypi pylint 2.4.4 py37_0 pyodbc 4.0.30 py37h0a44026_0 pyopenssl 19.1.0 py37_0 pyparsing 2.4.6 py_0 pyproj 2.3.1 py37h9bb365a_0 conda-forge pyqt 5.9.2 py37h655552a_2 pyrsistent 0.15.7 py37h1de35cc_0 pyshp 2.1.0 py_0 conda-forge pysocks 1.7.1 py37_0 pytables 3.4.4 py37h13cba08_0 pytest 5.3.5 py37_0 pytest-arraydiff 0.3 py37h39e3cac_0 pytest-astropy 0.8.0 py_0 pytest-astropy-header 0.1.2 py_0 pytest-doctestplus 0.5.0 py_0 pytest-openfiles 0.4.0 py_0 pytest-remotedata 0.3.2 py37_0 pytest-runner 5.2 py_0 conda-forge python 3.7.2 haf84260_0 python-dateutil 2.8.1 py_0 python-libarchive-c 2.8 py37_13 python-mimeparse 1.6.0 pypi_0 pypi python.app 2 py37_8 python_abi 3.7 1_cp37m conda-forge pytz 2019.3 py_0 pywavelets 1.1.1 py37h1de35cc_0 pyyaml 5.2 py37h1de35cc_0 pyzmq 18.1.1 py37h0a44026_0 qt 5.9.7 h468cd18_1 qtawesome 0.6.1 py_0 qtconsole 4.6.0 py_1 qtpy 1.9.0 py_0 r-base 3.4.3 h8d10ed9_4 r-maps 3.2.0 r343h7f474d2_0 readline 7.0 h1de35cc_5 requests 2.22.0 py37_1 rope 0.16.0 py_0 ruamel_yaml 0.15.87 py37h1de35cc_0 runtests 0.0.28 py37_2 bccp scikit-image 0.16.2 py37h6c726b0_0 scikit-learn 0.22.1 py37h27c97d8_0 scipy 1.2.0 pypi_0 pypi seaborn 0.10.0 py_0 selenium 3.141.0 pypi_0 pypi send2trash 1.5.0 py37_0 setuptools 45.2.0 py37_0 shapely 1.6.4 py37h5c88e11_1006 conda-forge simplegeneric 0.8.1 py37_2 singledispatch 3.4.0.3 py37_0 sip 4.19.8 py37h0a44026_0 six 1.14.0 py37_0 snappy 1.1.7 he62c110_3 snowballstemmer 2.0.0 py_0 sortedcollections 1.1.2 py37_0 sortedcontainers 2.1.0 py37_0 soupsieve 1.9.5 py37_0 sphinx 2.4.0 py_0 sphinxcontrib 1.0 py37_1 sphinxcontrib-applehelp 1.0.1 py_0 sphinxcontrib-devhelp 1.0.1 py_0 sphinxcontrib-htmlhelp 1.0.2 py_0 sphinxcontrib-jsmath 1.0.1 py_0 sphinxcontrib-qthelp 1.0.2 py_0 sphinxcontrib-serializinghtml 1.1.3 py_0 sphinxcontrib-websupport 1.2.0 py_0 spyder 3.3.6 py37_0 spyder-kernels 0.5.2 py37_0 sqlalchemy 1.3.13 py37h1de35cc_0 sqlite 3.31.1 ha441bb4_0 sqlparse 0.3.1 pypi_0 pypi statsmodels 0.11.0 py37h1de35cc_0 sympy 1.5.1 py37_0 tbb 2020.0 h04f5b5a_0 tblib 1.6.0 py_0 terminado 0.8.3 py37_0 testpath 0.4.4 py_0 tinyarray 1.2.1 pypi_0 pypi tk 8.6.8 ha441bb4_0 tktable 2.10 h1de35cc_0 toolz 0.10.0 py_0 tornado 6.0.3 py37h1de35cc_3 tqdm 4.42.1 py_0 traitlets 4.3.3 py37_0 triangle 20170429 pypi_0 pypi txaio 18.8.1 pypi_0 pypi unicodecsv 0.14.1 py37_0 unixodbc 2.3.7 h1de35cc_0 urllib3 1.25.8 py37_0 virtualenv 16.7.8 pypi_0 pypi vpnotebook 0.1.3 pypi_0 pypi vpython 7.4.7 pypi_0 pypi wcwidth 0.1.8 py_0 webencodings 0.5.1 py37_1 werkzeug 1.0.0 py_0 wheel 0.34.2 py37_0 widgetsnbextension 3.5.1 py37_0 wrapt 1.11.2 py37h1de35cc_0 wurlitzer 2.0.0 py37_0 xlrd 1.2.0 py37_0 xlsxwriter 1.2.7 py_0 xlwings 0.17.1 py37_0 xlwt 1.3.0 py37_0 xz 5.2.4 h1de35cc_4 yaml 0.1.7 hc338f04_2 zeromq 4.3.1 h0a44026_3 zict 1.0.0 py_0 zipp 2.2.0 py_0 zlib 1.2.11 h1de35cc_3 zstd 1.3.7 h5bba6e5_0 (base)

Il giorno 02 giu 2020, alle ore 18:08, Yu Feng notifications@github.com ha scritto:

My gut feeling is that you got an very old version of nbodykit (0.1.x).

What do you get with conda list?

Did you see any warnings from conda (e.g. conflicting packages) when installing nbodykit?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/bccp/nbodykit/issues/619#issuecomment-637653485, or unsubscribe https://github.com/notifications/unsubscribe-auth/AKMB4O4BNPZ4HRS3CY56GZ3RUUPY3ANCNFSM4NQTBS2Q.

andrea0292 commented 4 years ago

Dear Yu,

I solved the problem! Apparently the problem was with the Jupyter notebook I think, for some reason it sounds like it was trying to import two different installations of Python, or two different environments.

Thanks a lot for the availability anyway, you corde is amazing!

Best,

Andrea

Il giorno 02 giu 2020, alle ore 18:32, andrea caputo andrea0292@hotmail.it ha scritto:

Dear Yu,

thanks a lot for the fast reply! This is the conda list I get, and no I didn’t get any Warning during the installation apparently..I also tried with the Source installation but doesn’t seem to help..

A

21cmfast 3.0.0.dev0 pypi_0 pypi _anaconda_depends 2019.03 py37_0 _ipyw_jlab_nb_ext_conf 0.1.0 py37_0 _r-mutex 1.0.1 anacondar_1 conda-forge alabaster 0.7.12 py37_0 anaconda custom py37_1 anaconda-client 1.7.2 py37_0 anaconda-navigator 1.9.2 py37_0 anaconda-project 0.8.4 py_0 appnope 0.1.0 py37_0 appscript 1.1.0 py37h1de35cc_0 asgiref 3.2.7 pypi_0 pypi asn1crypto 1.3.0 py37_0 astroid 2.3.3 py37_0 astropy 3.2.3 py37h1de35cc_0 atomicwrites 1.3.0 py37_1 attrs 19.3.0 py_0 autobahn 18.12.1 pypi_0 pypi autograd 1.3 pypi_0 pypi autograde 0.1.1 pypi_0 pypi babel 2.8.0 py_0 backcall 0.1.0 py37_0 backports 1.0 py_2 backports.os 0.1.1 py37_0 backports.shutil_get_terminal_size 1.0.0 py37_2 beautifulsoup4 4.8.2 py37_0 bigfile 0.1.49 py37h776bbcc_7 bccp bitarray 1.2.1 py37h1de35cc_0 bkcharts 0.2 py37_0 blas 1.0 mkl bleach 3.1.0 py37_0 blosc 1.16.3 hd9629dc_0 bokeh 1.4.0 py37_0 boto 2.49.0 py37_0 bottleneck 1.3.1 py37h1d22016_0 build 1.0.2 pypi_0 pypi bwidget 1.9.14 0 conda-forge bzip2 1.0.8 h1de35cc_0 ca-certificates 2020.4.5.1 hecc5488_0 conda-forge cached-property 1.5.1 pypi_0 pypi cachey 0.2.1 py37_0 bccp cairo 1.16.0 h0ab9d94_1001 conda-forge camb 1.0.8 pypi_0 pypi cartopy 0.17.0 py37h95120c7_1007 conda-forge casjobs 0.0.1 pypi_0 pypi cctools 895 h7512d6f_0 certifi 2020.4.5.1 py37_0 anaconda cffi 1.13.2 py37hb5b8e2f_0 cfitsio 3.470 h389770f_2 conda-forge chardet 3.0.4 py37_1003 clang 4.0.1 h662ec87_0 anaconda clang_osx-64 4.0.1 h1ce6c1d_17 conda-forge clangxx 4.0.1 hc9b4283_0 conda-forge clangxx_osx-64 4.0.1 h22b1bf0_17 conda-forge classy 2.7.2 pypi_0 pypi classylss 0.2.9 py37hd5f3a30_7 bccp click 7.0 py37_0 cloog 0.18.0 0 anaconda cloudpickle 1.3.0 py_0 clyent 1.2.2 py37_1 cmasher 1.2.2 pypi_0 pypi colorama 0.4.3 py_0 colorspacious 1.1.2 pypi_0 pypi compiler-rt 4.0.1 h5487866_0 conda 4.8.3 py37hc8dfbb8_1 conda-forge conda-build 3.15.1 py37_0 conda-env 2.6.0 1 conda-package-handling 1.6.0 py37h1de35cc_0 contextlib2 0.6.0.post1 py_0 corner 2.0.1 pypi_0 pypi corrfunc 2.3.0 py37h776bbcc_10 bccp coverage 5.1 py37h9bfed18_0 conda-forge cryptography 2.8 py37ha12b0ac_0 curl 7.68.0 ha441bb4_0 cycler 0.10.0 py37_0 cython 0.29.14 pypi_0 pypi cytoolz 0.10.1 py37h1de35cc_0 dask 2.10.1 py_0 dask-core 2.10.1 py_0 dbus 1.13.12 h90a0687_0 decorator 4.4.1 py_0 defusedxml 0.6.0 py_0 dill 0.3.1.1 pypi_0 pypi distributed 2.10.0 py_0 django 3.0.5 pypi_0 pypi django-extensions 2.2.9 pypi_0 pypi django-tastypie 0.14.3 pypi_0 pypi docutils 0.16 py37_0 emcee 2.2.1 pypi_0 pypi entrypoints 0.3 py37_0 et_xmlfile 1.0.1 py37_0 expat 2.2.6 h0a44026_0 fastcache 1.1.0 py37h1de35cc_0 fftw 3.3.8 nompi_h5c49c53_1106 conda-forge filelock 3.0.12 py_0 fitsio 1.1.1 py37h234edc7_2 conda-forge flask 1.1.1 py_0 fontconfig 2.13.1 h1027ab8_1000 conda-forge freetype 2.9.1 hb4e5f40_0 fribidi 1.0.9 h0b31af3_0 conda-forge fsspec 0.6.2 py_0 future 0.18.2 py37hc8dfbb8_1 conda-forge gcc 4.8.5 8 anaconda geos 3.7.2 h6de7cb9_2 conda-forge get_terminal_size 1.0.0 h7520d66_0 gettext 0.19.8.1 h15daf44_3 gevent 1.4.0 py37h1de35cc_0 gfortran_osx-64 4.8.5 h22b1bf0_8 anaconda glib 2.63.1 hd977a24_0 glob2 0.7 py_0 gmp 6.1.2 hb37e062_1 gmpy2 2.0.8 py37h6ef4df4_2 graph 1.11 h0bee7d0_0 conda-forge graphite2 1.3.13 h2098e52_1000 conda-forge greenlet 0.4.15 py37h1de35cc_0 gsl 2.4 h1de35cc_4 gwdet 0.1.1 pypi_0 pypi h5py 2.8.0 py37h878fce3_3 halotools 0.7 py37h6c726b0_5 bccp harfbuzz 2.4.0 h92b87b8_1 conda-forge hdf5 1.10.2 hfa1e0ec_1 healpy 1.12.10 py37h2c3d0c3_0 conda-forge heapdict 1.0.1 py_0 html5lib 1.0.1 py37_0 hypothesis 5.4.1 py_0 icu 58.2 h4b95b61_1 idna 2.8 py37_0 imageio 2.6.1 py37_0 imagesize 1.2.0 py_0 iminuit 1.3.7 py37h86efe34_0 conda-forge importlib_metadata 1.5.0 py37_0 intel-openmp 2019.4 233 ipykernel 5.1.4 py37h39e3cac_0 ipython 7.12.0 py37h5ca1d4c_0 ipython_genutils 0.2.0 py37_0 ipywidgets 7.5.1 py_0 isl 0.12.2 1 anaconda isort 4.3.21 py37_0 itsdangerous 1.1.0 py37_0 jbig 2.1 h4d881f8_0 jdcal 1.4.1 py_0 jedi 0.16.0 py37_0 jinja2 2.11.1 py_0 joblib 0.14.1 py_0 jpeg 9b he5867d9_2 json5 0.9.1 py_0 jsonschema 3.2.0 py37_0 julia 0.4.1 pypi_0 pypi jupyter 1.0.0 py37_7 jupyter_client 5.3.4 py37_0 jupyter_console 6.1.0 py_0 jupyter_core 4.6.1 py37_0 jupyterlab 1.2.6 pyhf63ae98_0 jupyterlab_server 1.0.6 py_0 kdcount 0.3.29 py37h776bbcc_5 bccp keyring 21.1.0 py37_0 kiwisolver 1.1.0 py37h0a44026_0 krb5 1.17.1 hddcf347_0 kwant 1.4.1 pypi_0 pypi lazy-object-proxy 1.4.3 py37h1de35cc_0 ld64 274.2 h7c2db76_0 libarchive 3.3.3 h786848e_5 libcurl 7.68.0 h051b688_0 libcxx 4.0.1 h579ed51_0 libcxxabi 4.0.1 hebd6815_0 libedit 3.1.20181209 hb402a30_0 libffi 3.2.1 h475c297_4 libgfortran 3.0.1 h93005f0_2 libiconv 1.15 hdd342a3_7 liblief 0.9.0 h2a1bed3_2 libpng 1.6.37 ha441bb4_0 libsodium 1.0.16 h3efe00b_0 libssh2 1.8.2 ha12b0ac_0 libtiff 4.1.0 hcb84e12_0 libxml2 2.9.9 hf6e021a_1 libxslt 1.1.33 h33a18ac_0 ligo-segments 1.2.0 pypi_0 pypi llvm 4.0.1 hc748206_0 llvm-lto-tapi 4.0.1 h6701bc3_0 llvm-openmp 4.0.1 hcfea43d_1 llvmlite 0.31.0 py37h1341992_0 locket 0.2.0 py37_1 lscsoft-glue 2.0.0 pypi_0 pypi lxml 4.5.0 py37hef8c89e_0 lz4-c 1.8.1.2 h1de35cc_0 lzo 2.10 h362108e_2 mako 1.1.0 pypi_0 pypi markupsafe 1.1.1 py37h1de35cc_0 matplotlib 3.1.3 py37_0 matplotlib-base 3.1.3 py37h9aa3819_0 mccabe 0.6.1 py37_1 mcfit 0.0.16 py37h5ca1d4c_1 bccp mcint 0.1.dev5 pypi_0 pypi mistune 0.8.4 py37h1de35cc_0 mkl 2019.4 233 mkl-service 2.3.0 py37hfbe908c_0 mkl_fft 1.0.15 py37h5e564d8_0 mkl_random 1.1.0 py37ha771720_0 more-itertools 8.2.0 py_0 mpc 1.1.0 h6ef4df4_1 mpfr 4.0.1 h3018a27_3 mpi 1.0 mpich mpi4py 3.0.3 py37h77202c6_0 mpich 3.3.2 hc856adb_0 mpld3 0.3 pypi_0 pypi mpmath 1.1.0 py37_0 mpsort 0.1.17 py37h62e6fb7_9 bccp msgpack-python 0.6.1 py37h04f5b5a_1 multipledispatch 0.6.0 py37_0 multiprocess 0.70.9 pypi_0 pypi navigator-updater 0.2.1 py37_0 nbconvert 5.6.1 py37_0 nbformat 5.0.4 py_0 ncurses 6.1 h0a44026_1 networkx 2.4 py_0 nltk 3.4.5 py37_0 nose 1.3.7 py37_2 notebook 6.0.3 py37_0 numba 0.48.0 py37h6c726b0_0 numexpr 2.7.1 py37hce01a72_0 numpy 1.17.4 pypi_0 pypi numpy-base 1.18.1 py37h6575580_1 numpydoc 0.9.2 py_0 olefile 0.46 py37_0 opencv-python 3.4.2.16 pypi_0 pypi openpyxl 3.0.3 py_0 openssl 1.1.1g h0b31af3_0 conda-forge owslib 0.19.2 py_1 conda-forge packaging 20.1 py_0 palettable 3.3.0 pypi_0 pypi pandas 0.25.3 py37h0a44026_0 pandoc 2.2.3.2 0 pandocfilters 1.4.2 py37_1 pango 1.42.4 haa940fe_4 conda-forge parso 0.6.1 py_0 partd 1.1.0 py_0 path 13.1.0 py37_0 path.py 12.4.0 0 pathlib2 2.3.5 py37_0 pathos 0.2.5 pypi_0 pypi patsy 0.5.1 py37_0 pcre 8.43 h0a44026_0 pep8 1.7.1 py37_0 pexpect 4.8.0 py37_0 pfft-python 0.1.21 py37h62e6fb7_10 bccp pickleshare 0.7.5 py37_0 pillow 7.0.0 py37h4655f20_0 pip 19.3.1 pypi_0 pypi pixman 0.38.0 h01d97ff_1003 conda-forge pkginfo 1.5.0.1 py37_0 pluggy 0.13.1 py37_0 ply 3.11 py37_0 pmesh 0.1.55 py37h776bbcc_5 bccp powerbox 0.6.0 pypi_0 pypi pox 0.2.7 pypi_0 pypi ppft 1.6.6.1 pypi_0 pypi progressbar 2.5 pypi_0 pypi proj4 6.1.1 hca663eb_1 conda-forge prometheus_client 0.7.1 py_0 prompt_toolkit 3.0.3 py_0 psrqpy 1.0.0 pypi_0 pypi psutil 5.6.7 py37h1de35cc_0 ptyprocess 0.6.0 py37_0 py 1.8.1 py_0 py-lief 0.9.0 py37h1413db1_2 pycbc 1.15.1 pypi_0 pypi pycodestyle 2.5.0 py37_0 pycosat 0.6.3 py37h1de35cc_0 pycparser 2.19 py37_0 pycrypto 2.6.1 py37h1de35cc_9 pycurl 7.43.0.5 py37ha12b0ac_0 pyepsg 0.4.0 py_0 conda-forge pyfftw 0.11.1 py37h0aba3d0_1002 conda-forge pyflakes 2.1.1 py37_0 pyflation 0.2.3 pypi_0 pypi pygments 2.5.2 py_0 pykdtree 1.3.1 py37h10e2902_1003 conda-forge pylians3 3.0 pypi_0 pypi pylint 2.4.4 py37_0 pyodbc 4.0.30 py37h0a44026_0 pyopenssl 19.1.0 py37_0 pyparsing 2.4.6 py_0 pyproj 2.3.1 py37h9bb365a_0 conda-forge pyqt 5.9.2 py37h655552a_2 pyrsistent 0.15.7 py37h1de35cc_0 pyshp 2.1.0 py_0 conda-forge pysocks 1.7.1 py37_0 pytables 3.4.4 py37h13cba08_0 pytest 5.3.5 py37_0 pytest-arraydiff 0.3 py37h39e3cac_0 pytest-astropy 0.8.0 py_0 pytest-astropy-header 0.1.2 py_0 pytest-doctestplus 0.5.0 py_0 pytest-openfiles 0.4.0 py_0 pytest-remotedata 0.3.2 py37_0 pytest-runner 5.2 py_0 conda-forge python 3.7.2 haf84260_0 python-dateutil 2.8.1 py_0 python-libarchive-c 2.8 py37_13 python-mimeparse 1.6.0 pypi_0 pypi python.app 2 py37_8 python_abi 3.7 1_cp37m conda-forge pytz 2019.3 py_0 pywavelets 1.1.1 py37h1de35cc_0 pyyaml 5.2 py37h1de35cc_0 pyzmq 18.1.1 py37h0a44026_0 qt 5.9.7 h468cd18_1 qtawesome 0.6.1 py_0 qtconsole 4.6.0 py_1 qtpy 1.9.0 py_0 r-base 3.4.3 h8d10ed9_4 r-maps 3.2.0 r343h7f474d2_0 readline 7.0 h1de35cc_5 requests 2.22.0 py37_1 rope 0.16.0 py_0 ruamel_yaml 0.15.87 py37h1de35cc_0 runtests 0.0.28 py37_2 bccp scikit-image 0.16.2 py37h6c726b0_0 scikit-learn 0.22.1 py37h27c97d8_0 scipy 1.2.0 pypi_0 pypi seaborn 0.10.0 py_0 selenium 3.141.0 pypi_0 pypi send2trash 1.5.0 py37_0 setuptools 45.2.0 py37_0 shapely 1.6.4 py37h5c88e11_1006 conda-forge simplegeneric 0.8.1 py37_2 singledispatch 3.4.0.3 py37_0 sip 4.19.8 py37h0a44026_0 six 1.14.0 py37_0 snappy 1.1.7 he62c110_3 snowballstemmer 2.0.0 py_0 sortedcollections 1.1.2 py37_0 sortedcontainers 2.1.0 py37_0 soupsieve 1.9.5 py37_0 sphinx 2.4.0 py_0 sphinxcontrib 1.0 py37_1 sphinxcontrib-applehelp 1.0.1 py_0 sphinxcontrib-devhelp 1.0.1 py_0 sphinxcontrib-htmlhelp 1.0.2 py_0 sphinxcontrib-jsmath 1.0.1 py_0 sphinxcontrib-qthelp 1.0.2 py_0 sphinxcontrib-serializinghtml 1.1.3 py_0 sphinxcontrib-websupport 1.2.0 py_0 spyder 3.3.6 py37_0 spyder-kernels 0.5.2 py37_0 sqlalchemy 1.3.13 py37h1de35cc_0 sqlite 3.31.1 ha441bb4_0 sqlparse 0.3.1 pypi_0 pypi statsmodels 0.11.0 py37h1de35cc_0 sympy 1.5.1 py37_0 tbb 2020.0 h04f5b5a_0 tblib 1.6.0 py_0 terminado 0.8.3 py37_0 testpath 0.4.4 py_0 tinyarray 1.2.1 pypi_0 pypi tk 8.6.8 ha441bb4_0 tktable 2.10 h1de35cc_0 toolz 0.10.0 py_0 tornado 6.0.3 py37h1de35cc_3 tqdm 4.42.1 py_0 traitlets 4.3.3 py37_0 triangle 20170429 pypi_0 pypi txaio 18.8.1 pypi_0 pypi unicodecsv 0.14.1 py37_0 unixodbc 2.3.7 h1de35cc_0 urllib3 1.25.8 py37_0 virtualenv 16.7.8 pypi_0 pypi vpnotebook 0.1.3 pypi_0 pypi vpython 7.4.7 pypi_0 pypi wcwidth 0.1.8 py_0 webencodings 0.5.1 py37_1 werkzeug 1.0.0 py_0 wheel 0.34.2 py37_0 widgetsnbextension 3.5.1 py37_0 wrapt 1.11.2 py37h1de35cc_0 wurlitzer 2.0.0 py37_0 xlrd 1.2.0 py37_0 xlsxwriter 1.2.7 py_0 xlwings 0.17.1 py37_0 xlwt 1.3.0 py37_0 xz 5.2.4 h1de35cc_4 yaml 0.1.7 hc338f04_2 zeromq 4.3.1 h0a44026_3 zict 1.0.0 py_0 zipp 2.2.0 py_0 zlib 1.2.11 h1de35cc_3 zstd 1.3.7 h5bba6e5_0 (base)

Il giorno 02 giu 2020, alle ore 18:08, Yu Feng <notifications@github.com mailto:notifications@github.com> ha scritto:

My gut feeling is that you got an very old version of nbodykit (0.1.x).

What do you get with conda list?

Did you see any warnings from conda (e.g. conflicting packages) when installing nbodykit?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/bccp/nbodykit/issues/619#issuecomment-637653485, or unsubscribe https://github.com/notifications/unsubscribe-auth/AKMB4O4BNPZ4HRS3CY56GZ3RUUPY3ANCNFSM4NQTBS2Q.

rainwoodman commented 4 years ago

Glad you were able to figure it out! I am closing the issue then.