Update to 2020

[steffilazerte]

Ongoing update of PM2.5 indicator scripts to 2020 data and indicator design.

Main components

• [X] Loading new data
• [X] Cleaning data
• [x] Analysis
• [x] Outputs
  • [x] Indicator Figures (new design) - plot_caaqs() function added to rcaaqs
  • [x] Supporting figures
• [x] Interactive Indicator map
• [x] Print version RMD
  • [X] Update text summaries
  • [X] Make references to CAAQS cutoffs refer to rcaaqs directly
  • [X] Use exported objects (don't re-compile parts of 04_output.R)
• [X] BCData export

Other

• [X] Setup renv
• [X] ~Use targets ?~ (Decided against for now)

Details to-do

• [x] Check regarding stations in cleaning
• [x] Check regarding treatment of TFEE
• [X] ~Change TFEE legend on figures to reference Forest fires~ (Decided against for now)
• [X] Need feedback on print version as I can't evaluate it properly without envreportutils.internal

Finalizing

• [ ] Update renv package list with final, merged versions of rcaaqs and envreportutils.
• [ ] Transfer so2_caaqs_indicator and no2_caaqs_indicator over to bcgov (I think as follows):
  • [ ] @KarHarker needs to accept invitation
  • [ ] Then @steffilazerte transfers ownership
  • [ ] Then @KarHarker transfers to bcgov organization

[steffilazerte]

Hi @KarHarker @jeromerobles, @j-galloway,

I think I'm ready for a preliminary review! I don't have access to envreportutils.internal, so I can't be sure the print version renders properly, and there are definitely some paragraphs that need to be update. I've also open an issue for questions regarding the new annual figures (#19), if you want to preview the figure without having to compile everything.

Note that I've implemented renv to keep track of packages and versions, and that I'm currently using a dev version of rcaaqs as well as of envreportutils. However, the first step of each of the scripts is to source the 00_setup.R file which should ensure you're using the same packages/versions as me. This is the first time I've collaborated with renv, so let me know if you run into any problems!

Please let me know of anything that needs to change (small or big), or if you have any questions or need me to add any explanations to the code!

[KarHarker]

Thanks, @steffilazerte! I will review early next week