Closed zhangyafeng1 closed 4 years ago
hmm the script HPTASRwgs_classI-II.sh is not processing bam files... so not sure what the relation between the bam file size and this is. Do you mean your input read set?
On thing that would be helpful is to know which step is taking so long. I suspect TASR, which could be addressed by replacing with a faster multi-threaded assembler..
The script HPTASRwgs_classI-II.sh have running 7 days ,,,,,, my bam file is 7.9G , OOOOMMMMMGGGGGGG,,,toooooo loooooooooong..........