search

bcgsc / NanoSim

Nanopore sequence read simulator
Other
217 stars 51 forks source link

Pre-trained models selection for genome reads simulation #105

Closed VeronicaBS closed 3 years ago

VeronicaBS commented 3 years ago

Hi,

I want to perform nanopore reads simulation of a bacterial strain using nanosim 3.0.0. However, I do not know which pre-trained model is more suitable for it since the available ones are based on human, mouse or metagenomic data. If I would need to run my own reads profiles using read_analysis.py genome, I do not know how to obtain the reads dataset.

Thank you very much in advance.

Best, Verónica