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bcgsc / NanoSim

Nanopore sequence read simulator
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Conda install of v 3.0.2 actually installs v 3.0.0 #133

Closed james-vincent closed 2 years ago

james-vincent commented 2 years ago

meta.yaml shows version 3.0.2 but installation via conda with nanosim=3.0.2 (the version listed on bioconda) results in version 3.0.0 code being installed.

kmnip commented 2 years ago

It should still install version 3.0.2. I realized that we forgot to update the version number in read_analysis.py and simulator.py. Are you not able see/use the new features from versions 3.0.2 and 3.0.1?

james-vincent commented 2 years ago

Thanks for the quick response. I’m not sure about the features - I was installing for someone else. Just thought I’d point out the version number conflict.

Jim

James Vincent, PhD Bioinformatics Software Curator Dept. of BCMP, Harvard Medical School — BioGrids.org --

On Oct 7, 2021, 12:21 PM -0400, Ka Ming Nip @.***>, wrote:

It should still install version 3.0.2. I realized that we forgot to update the version number in read_analysis.py and simulator.py. Are you not able see/use the new features from versions 3.0.2 and 3.0.1? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android.

kmnip commented 2 years ago

Hi James,

Thanks for reporting this! One of the prominent features in v3.0.1 was support for BAM files and gzipped files. So, your colleague(s) should see that BAM files are generated instead of SAM files when read_analysis.py is run. I will close this issue for now. Please let us know if you have more issues.

Ka Ming