Are the parameters of the pre-trained models available?

bcgsc / NanoSim

Nanopore sequence read simulator

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Are the parameters of the pre-trained models available? #134

Closed dpellow closed 2 years ago

dpellow commented 2 years ago

Are parameters of the pre-trained models such as error rates, length distribution etc reported somewhere?

SaberHQ commented 2 years ago

Hey @dpellow Thanks for your question and sorry for late response as I was away from work for a while.

You may find all those information within each pre-trained model directory. For example you may get information about the error rates inside the *error_rate.tsv file. Length distribution information is stored as .pkl files as well.

I hope this answers your question. If you have more specific question or any other issues, please let me know and I will do my best to help you with that.

SaberHQ commented 2 years ago

Hey @dpellow

Hope you were able to find the answer you were looking for. I am closing this issue for now. Please feel free to reopen and ask any other questions if you need help.