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bcgsc / NanoSim

Nanopore sequence read simulator
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No such file or directory: 'human_strandness_rate' #137

Closed mksingh2104 closed 2 years ago

mksingh2104 commented 2 years ago

I am getting following error with command: simulator.py genome -dna_type linear -rg hg19.fa -c human -max 10000 -min 1000

with open(model_prefix + "_strandness_rate", 'r') as strand_profile:

FileNotFoundError: [Errno 2] No such file or directory: 'human_strandness_rate'

SaberHQ commented 2 years ago

Hey @manojwustl

May I ask whether you trained your own model (using read_analysis script) or you are using one of the pre-trained models provided along with NanoSim? If it is the later case, what is the pre-trained model you are using?

SaberHQ commented 2 years ago

Dear @manojwustl

It is been a while since our last conversation. I hope you were able to run NanoSim and get your results. strandness_rate is calculated during the training stage. Please make sure you ran that phase successfully.

I am closing the issue for now. Please feel free to reopen it if you still got question regarding this. Thanks.