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bcgsc / NanoSim

Nanopore sequence read simulator
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file has no sequences defined (mode='r') - is it SAM/BAM format? Consider opening with check_sq=False #183

Closed jackchen129 closed 1 year ago

jackchen129 commented 1 year ago

I'm using the metagenome mode with only two reference genomes as a test run. But the characterization stage ended up with the following error:

file has no sequences defined (mode='r') - is it SAM/BAM format? Consider opening with check_sq=False

Please help with this. Thanks.

jackchen129 commented 1 year ago

I updated Samtools to the newest version and the problem was solved.