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Nanopore sequence read simulator
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Fixes for -min and -max parameters
#234
Closed
lcoombe
closed
1 month ago
lcoombe
commented
1 month ago
Genome and metagenome modes: Add extra check before writing read to file to avoid reads that are slightly out of the specified length range
Same for unaligned reads
Clarified in the transcriptome help page that
-min
and
-max
are only used for unaligned reads (
https://github.com/bcgsc/NanoSim/issues/160
)
To be consistent with genome mode, don't allow
--perfect
and
--chimeric
reads simultaneously in metagenome mode
-minand-maxare only used for unaligned reads (https://github.com/bcgsc/NanoSim/issues/160)--perfectand--chimericreads simultaneously in metagenome mode