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bcgsc / NanoSim

Nanopore sequence read simulator
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all reads aligned bug? #50

Closed machand closed 4 years ago

machand commented 5 years ago

Hi developers With a particular simulation we repeatedly get an error when starting the sim, because the file _unaligned_length.pkl has not been generated during training. This has not been a problem when running nanosim on our other datasets. Is this happening because there are no unaligned reads in this particular training set? Is there a way to sort this out so we can still get a sim from this dataset? thanks!

cheny19 commented 5 years ago

Hi,

Thanks for bringing up this bug. Yes, it is because there's no unaligned reads, but the program is looking for some to build a kde model. We will fix it asap.

Thanks, Chen

baraaorabi commented 5 years ago

I'm having the same problem too. Waiting for your fix. Thanks.

cheny19 commented 4 years ago

Hi @machand and @baraaorabi,

The above-mentioned bug is fixed, please download the latest release and git it a shot.

Thanks, Chen