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bcgsc / NanoSim

Nanopore sequence read simulator
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Define read length parameters #55

Closed Raymi1 closed 5 years ago

Raymi1 commented 5 years ago

Hello,

Is it possible to use a generic genome to train for error rates and the distribution, and to run the simulation stage with manually defined mean read length ?

Thanks for your help

SaberHQ commented 5 years ago

Hello @Raymi1

You may use any kind of read set as input for the purpose of training and learning the error rates and length distribution. Check the following options in the simulation stage for what you are looking for:

--median_len --sd_len