[x] version of RNA-Bloom with java -jar RNA-Bloom.jar -version
2.0.0 and earlier versions
[x] version of java with java -version
jre-11-openjdk-11.0.16.0.8-1.el7_9.x86_64
[x] exact command used to run RNA-Bloom
long read assembly mode (-long)
Names in long reads containing suffixes /1 and /2 would be trimmed as if they were paired-end reads.
For example, name/1 and name/2 would be trimmed to name, resulting in two names sharing the same name. This would lead to an error in later stages of the assembly.
Please report
[x] version of RNA-Bloom with
java -jar RNA-Bloom.jar -version2.0.0 and earlier versions[x] version of java with
java -versionjre-11-openjdk-11.0.16.0.8-1.el7_9.x86_64[x] exact command used to run RNA-Bloom long read assembly mode (
-long)Names in long reads containing suffixes
/1and/2would be trimmed as if they were paired-end reads. For example,name/1andname/2would be trimmed toname, resulting in two names sharing the same name. This would lead to an error in later stages of the assembly.