Closed schorlton closed 1 year ago
Hi @schorlton,
One of our collaborators reported the same issue (not on Github) when testing RNA-Bloom with just 5 reads.
This error arose because the default min read depth -lrrd
is 3 and there are no sequences meeting this criterion.
I will make an update with a more descriptive message.
Thanks, Ka Ming
Please report
java -jar RNA-Bloom.jar -version
java -version
Same software versions as https://github.com/bcgsc/RNA-Bloom/issues/46
Thanks for the amazing tool. For the following job, I suspect it failed because there wasn't enough input data, but the log message is fairly vague. Was it a corrupt FASTQ? Did I OOM? I don't know based on this message. Is it possible to make it a bit clearer on what exactly went wrong, so I can decide when I need to investigate further? I think there is a separate error message that is sometimes triggered when there isn't enough input data. Thanks!